Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004212`

染色体: Chr07 坐标: 54317016-54319809 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004212`
名称	SmilChr07G004212
描述	uncharacterized SmilChr07G004212
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	54317016 - 54319809 / `+`

ID 对照

NCBI Gene ID	`LOC130994949`
GeneID	`130994949`
locus_tag	`-`
NCBI Name	`LOC130994949`
原始查询	`SmilChr07G004212`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Peptidyl-tRNA hydrolase II (PTH2) family protein [Source:NCBI gene (formerly Entrezgene);Acc:829426]; symbol=AT4G32900; hit=AT4G32900; species=arabidopsis; confidence=high
产物	Peptidyl-tRNA hydrolase II (PTH2) family protein [Source:NCBI gene (formerly Entrezgene);Acc:829426]; symbol=AT4G32900; hit=AT4G32900; species=arabidopsis; confidence=high
Arabidopsis	`AT4G32900` (AT4G32900) Peptidyl-tRNA hydrolase II (PTH2) family protein [Source:NCBI gene (formerly Entrezgene);Acc:829426] identity=62.7; qcov=1.01; evalue=2.67e-79; confidence=high
Rice	`Os05g0520200` - identity=58.7; qcov=1.03; evalue=5.23e-68; confidence=high
GO	GO:0004045 (peptidyl-tRNA hydrolase activity); GO:0005739 (mitochondrion); GO:0005829 (cytosol)
KEGG	-
Pfam	PF01981 (PTH2)
InterPro	-
eggNOG	-
NR	GeneID:130994949

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	0.80000	`XP_057776133.1`
2	Mitochondrion	线粒体	0.60000	`XP_057776141.1`
3	Chloroplast membrane	叶绿体膜	0.20000	`XP_057776133.1`
4	Peroxisome	过氧化物酶体	0.20000	`XP_057776139.1`
5	Nucleus	细胞核	0.00000	`XP_057776142.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:54317238`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B111
`Chr7:54317354`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B104
`Chr7:54317354`	`GC`	`G`	1bp_deletion	CDS_variant	1	B104
`Chr7:54317484`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A20,C54
`Chr7:54319191`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B18,B5,B77
`Chr7:54319241`	`T`	`TG`	1bp_insertion	frameshift_variant	40	A15,A24,B1,B112,B119,B122,B126,B128,B15,B38,B39,B46,B50,B51,B57,B60,B63,B65,B67,B68,B7,B80,B85,B87,B94,B98,C15,C19,C28,C30,C39,C46,C48,C49,C58,C61,C75,C8,C80,D7
`Chr7:54319267`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A18,B140

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776133.1

201 aa

100

201

PTH2

PF01981 PTH2 81-181 aa

XP_057776134.1

200 aa

100

200

PTH2

PF01981 PTH2 80-180 aa

XP_057776136.1

199 aa

100

199

PTH2

PF01981 PTH2 79-179 aa

XP_057776137.1

199 aa

100

199

PTH2

PF01981 PTH2 81-179 aa

XP_057776138.1

198 aa

198

PTH2

PF01981 PTH2 80-178 aa

XP_057776139.1

195 aa

195

PTH2

PF01981 PTH2 81-195 aa

XP_057776140.1

194 aa

194

PTH2

PF01981 PTH2 80-194 aa

XP_057776141.1

193 aa

193

PTH2

PF01981 PTH2 79-193 aa

XP_057776142.1

193 aa

193

PTH2

PF01981 PTH2 81-193 aa

XP_057776143.1

192 aa

192

PTH2

PF01981 PTH2 80-192 aa

XP_057776144.1

191 aa

191

PTH2

PF01981 PTH2 79-191 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776133.1`	Pfam	`PF01981`	PTH2	Family	81	181	1.8e-38	132.0	Peptidyl-tRNA hydrolase PTH2
`XP_057776134.1`	Pfam	`PF01981`	PTH2	Family	80	180	1.8e-38	132.0	Peptidyl-tRNA hydrolase PTH2
`XP_057776136.1`	Pfam	`PF01981`	PTH2	Family	79	179	1.8e-38	132.0	Peptidyl-tRNA hydrolase PTH2
`XP_057776137.1`	Pfam	`PF01981`	PTH2	Family	81	179	8e-37	126.7	Peptidyl-tRNA hydrolase PTH2
`XP_057776138.1`	Pfam	`PF01981`	PTH2	Family	80	178	8e-37	126.7	Peptidyl-tRNA hydrolase PTH2
`XP_057776139.1`	Pfam	`PF01981`	PTH2	Family	81	195	1.3e-44	151.7	Peptidyl-tRNA hydrolase PTH2
`XP_057776140.1`	Pfam	`PF01981`	PTH2	Family	80	194	1.3e-44	151.7	Peptidyl-tRNA hydrolase PTH2
`XP_057776141.1`	Pfam	`PF01981`	PTH2	Family	79	193	1.3e-44	151.8	Peptidyl-tRNA hydrolase PTH2
`XP_057776142.1`	Pfam	`PF01981`	PTH2	Family	81	193	6.1e-43	146.4	Peptidyl-tRNA hydrolase PTH2
`XP_057776143.1`	Pfam	`PF01981`	PTH2	Family	80	192	6.1e-43	146.4	Peptidyl-tRNA hydrolase PTH2
`XP_057776144.1`	Pfam	`PF01981`	PTH2	Family	79	191	6.1e-43	146.4	Peptidyl-tRNA hydrolase PTH2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

11 records

下载 cDNA FASTA

XM_057920150.1
TTTTTCAGCTTTCAATTTCAATTTGTGCCTAGTCTTTCATTCCATCTTCACTGATTTAGTTTAGTCCACTTGAAACGACATCGTATTGTGCCGTTAGCCTTCTTCAATCTTCACCAAAATTTATCTCATCCAGCAACCATTTCCGTTACTACCTCCATCTTCACAGCTTTAAAACAATCAGAGCTTCCAAAATTATATCACTGATGAGTTCTTTTAAGAACCCTTCATCCAGAAAGCAGCAGAAACATGAGAAAAGGGAG...

XM_057920156.1
TTTTTCAGCTTTCAATTTCAATTTGTGCCTAGTCTTTCATTCCATCTTCACTGATTTAGTTTAGTCCACTTGAAACGACATCGTATTGTGCCGTTAGCCTTCTTCAATCTTCACCAAAATTTATCTCATCCAGCAACCATTTCCGTTACTACCTCCATCTTCACAGCTTTAAAACAATCAGAGCTTCCAAAATTATATCACTGATGAGTTCTTTTAAGAACCCTTCATCCAGAAAGCAGCAGAAACATGAGAAAAGGGAG...

CDS

11 records

下载 CDS FASTA

LOC130994949
ATGAGTTCTTTTAAGAACCCTTCATCCAGAAAGCAGCAGAAACATGAGAAAAGGGAGGCTTTAGGAGTGAGTTTCAGGCCCGAAAACTTCATCCCGGGCCTCATTATCGGGTTCATATTCGGGTTCTTTTTGGACTTGGCTAAGCCCGCAAAAAGCCCGACTGGCAGGAAAATTGGGAGCTCACCAACTACCAAACATCAACAGCAGCCAAGAACTGTGTCCACCAACAATGATGAAGAGCTCAAAATGGTCTTAGTAGT...

Protein

11 records

下载 Protein FASTA

XP_057776133.1
MSSFKNPSSRKQQKHEKREALGVSFRPENFIPGLIIGFIFGFFLDLAKPAKSPTGRKIGSSPTTKHQQQPRTVSTNNDEELKMVLVVRQDLKMGTGKIASQCAHAATGMYAELVQSNRSLLRHWELCGQAKIVVTCKNQQEMNKIKDAAEDIGLPTFTVADAGRTQVSAGSKTVLAVGPGSFPVLFHIFFFFECKKASTRH

XP_057776134.1
MSSFKNPSSRKQKHEKREALGVSFRPENFIPGLIIGFIFGFFLDLAKPAKSPTGRKIGSSPTTKHQQQPRTVSTNNDEELKMVLVVRQDLKMGTGKIASQCAHAATGMYAELVQSNRSLLRHWELCGQAKIVVTCKNQQEMNKIKDAAEDIGLPTFTVADAGRTQVSAGSKTVLAVGPGSFPVLFHIFFFFECKKASTRH

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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