Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004217`

染色体: Chr07 坐标: 54364349-54368862 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004217`
名称	SmilChr07G004217
描述	protein SAWADEE HOMEODOMAIN HOMOLOG 1-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	54364349 - 54368862 / `-`

ID 对照

NCBI Gene ID	`LOC130994926`
GeneID	`130994926`
locus_tag	`-`
NCBI Name	`LOC130994926`
原始查询	`SmilChr07G004217`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein SAWADEE HOMEODOMAIN HOMOLOG 1-like
产物	protein SAWADEE HOMEODOMAIN HOMOLOG 1-like
Arabidopsis	`AT3G18380` (SHH2) DNA-BINDING TRANSCRIPTION FACTOR 2 [Source:NCBI gene (formerly Entrezgene);Acc:821367] identity=40.5; qcov=1.09; evalue=4.97e-59; confidence=medium
Rice	`Os09g0346900` - identity=40.5; qcov=1.06; evalue=1e-58; confidence=medium
GO	GO:0003682 (chromatin binding)
KEGG	-
Pfam	PF16719 (SAWADEE)
InterPro	-
eggNOG	-
NR	GeneID:130994926

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057776064.1`
2	Chromosome	染色体	0.00000	`XP_057776064.1`
3	Centromere	着丝粒	0.00000	`XP_057776064.1`
4	Chromatin	染色质	0.00000	`XP_057776064.1`
5	Telomere	端粒	0.00000	`XP_057776064.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:54364642`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B120
`Chr7:54364668`	`CAA`	`C`	2bp_deletion	frameshift_variant	173	A11,A13,A15,A16,A21,A22,A23,A25,A3,A9,B1,B10,B100,B101,B102,B103,B104,B105,B107,B108,B109,B11,B111,B112,B114,B117,B118,B119,B121,B122,B123,B126,B128,B129,B130,B131,B133,B134,B138,B139,B15,B16,B17,B18,B19,B20,B21,B22,B23,B25,B26,B3,B30,B31,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B48,B5,B50,B51,B53,B55,B56,B57,B58,B6,B61,B63,B64,B65,B67,B68,B69,B7,B70,B72,B73,B75,B76,B77,B78,B8,B80,B84,B85,B87,B88,B89,B91,B94,B95,B96,B97,B98,C1,C10,C12,C13,C14,C16,C17,C18,C19,C2,C20,C23,C24,C26,C28,C29,C3,C30,C33,C36,C37,C39,C4,C40,C41,C42,C44,C45,C46,C47,C48,C49,C5,C51,C52,C53,C54,C55,C56,C6,C60,C61,C63,C64,C65,C66,C67,C7,C70,C71,C73,C75,C78,C79,C8,C80,C84,C85,C86,C87,D1,D11,D2,D5,D7,D8
`Chr7:54364669`	`A`	`AAT`	2bp_insertion	frameshift_variant	7	B10,B18,B44,B5,B56,B77,B96
`Chr7:54364690`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B60,B7,C15,C27,C77
`Chr7:54364699`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A3
`Chr7:54364701`	`A`	`AC`	1bp_insertion	frameshift_variant	2	B133,B16
`Chr7:54364701`	`A`	`AC`	1bp_insertion	CDS_variant	2	B133,B16
`Chr7:54364717`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:54366393`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C36
`Chr7:54367872`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B113,B16,C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776064.1

270 aa

135

270

SAWADEE

PF16719 SAWADEE 116-235 aa

XP_057776066.1

270 aa

135

270

SAWADEE

PF16719 SAWADEE 116-235 aa

XP_057776067.1

258 aa

129

258

SAWADEE

PF16719 SAWADEE 104-223 aa

XP_057776068.1

255 aa

128

255

SAWADEE

PF16719 SAWADEE 116-243 aa

XP_057776069.1

254 aa

127

254

SAWADEE

PF16719 SAWADEE 116-242 aa

XP_057776070.1

243 aa

122

243

SAWADEE

PF16719 SAWADEE 104-231 aa

XP_057776071.1

242 aa

121

242

SAWADEE

PF16719 SAWADEE 104-230 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776064.1`	Pfam	`PF16719`	SAWADEE	Domain	116	235	6.5e-44	149.7	SAWADEE domain
`XP_057776066.1`	Pfam	`PF16719`	SAWADEE	Domain	116	235	6.5e-44	149.7	SAWADEE domain
`XP_057776067.1`	Pfam	`PF16719`	SAWADEE	Domain	104	223	6.7e-44	149.7	SAWADEE domain
`XP_057776068.1`	Pfam	`PF16719`	SAWADEE	Domain	116	243	1e-45	155.5	SAWADEE domain
`XP_057776069.1`	Pfam	`PF16719`	SAWADEE	Domain	116	242	2.6e-44	151.0	SAWADEE domain
`XP_057776070.1`	Pfam	`PF16719`	SAWADEE	Domain	104	231	1e-45	155.5	SAWADEE domain
`XP_057776071.1`	Pfam	`PF16719`	SAWADEE	Domain	104	230	2.6e-44	151.0	SAWADEE domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XR_009091945.1
AAAAGACAAAAAAGAAGAAGATTTGGTGCACCAAAATTAACCTTCTTCACTTCTTCAGCCAAAAAAGGTTCATTGCTACAGGCACCGTGATCACTCTCTCTCCCTCTCTAGAATCTACTGGAGTCCAGTCGAGGCAGAATGAATCTTCGGCCCAGGCAGAAACAGCCCTTTTCCGGCTTCACCAAAGCCGAGGTTCAGAAAATGGAGCAATTACTTCACGACTCGAACAAACCGTCCCTGGATATGGATTACTTTAAGAA...

XM_057920083.1
CGTTAGCTGAGATTGAGAATGGTGAATTTCTCCACTGTCAGAGATGGATGAGTTTATATACAGGCACCGTGATCACTCTCTCTCCCTCTCTAGAATCTACTGGAGTCCAGTCGAGGCAGAATGAATCTTCGGCCCAGGCAGAAACAGCCCTTTTCCGGCTTCACCAAAGCCGAGGTTCAGAAAATGGAGCAATTACTTCACGACTCGAACAAACCGTCCCTGGATATGGATTACTTTAAGAATTTGGCAAAAGTTTTCAA...

CDS

7 records

下载 CDS FASTA

LOC130994926
ATGAATCTTCGGCCCAGGCAGAAACAGCCCTTTTCCGGCTTCACCAAAGCCGAGGTTCAGAAAATGGAGCAATTACTTCACGACTCGAACAAACCGTCCCTGGATATGGATTACTTTAAGAATTTGGCAAAAGTTTTCAATCGTTCGAGTAATCGTGCGGGGAAGCCTATTCTGAAATGGACTGAGATCCAGAATTGGTTTCAGACGAGGCAAGAATACCACCTTTCTGAAGAGACTTCGTTGAATGGAGCCGAGGAAAT...

Protein

7 records

下载 Protein FASTA

XP_057776064.1
MNLRPRQKQPFSGFTKAEVQKMEQLLHDSNKPSLDMDYFKNLAKVFNRSSNRAGKPILKWTEIQNWFQTRQEYHLSEETSLNGAEEIHVVPDALNQTKATEIPEMFEGPKGQDVPNLEFEAKSSTDGAWYDVDTFLSHRFLSSGEIEVYVRYIGFGSVHDEWVNVKKDVRERSVALDHSECHKLKVGDPVVCFQERGDQARYYDAHVVDIQRRLHDIRGCRCLFLISYDHDNTQVKKFTVSPLLLPDSQWRRIYAVFVGF...

XP_057776066.1
MNLRPRQKQPFSGFTKAEVQKMEQLLHDSNKPSLDMDYFKNLAKVFNRSSNRAGKPILKWTEIQNWFQTRQEYHLSEETSLNGAEEIHVVPDALNQTKATEIPEMFEGPKGQDVPNLEFEAKSSTDGAWYDVDTFLSHRFLSSGEIEVYVRYIGFGSVHDEWVNVKKDVRERSVALDHSECHKLKVGDPVVCFQERGDQARYYDAHVVDIQRRLHDIRGCRCLFLISYDHDNTQVKKFTVSPLLLPDSQWRRIYAVFVGF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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