当前解析结果
SmilChr07G004218| 统一新 Gene ID | SmilChr07G004218 |
|---|---|
| 名称 | SmilChr07G004218 |
| 描述 | NADP-dependent malic enzyme-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 54390415 - 54395386 / + |
| NCBI Gene ID | LOC130994842 |
|---|---|
| GeneID | 130994842 |
| locus_tag | - |
| NCBI Name | LOC130994842 |
| 原始查询 | SmilChr07G004218 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | NADP-dependent malic enzyme-like |
| 产物 | NADP-dependent malic enzyme-like |
| Arabidopsis | AT5G25880 (NADP-ME3)NADP-malic enzyme 3 [Source:NCBI gene (formerly Entrezgene);Acc:832657] identity=82.2; qcov=0.933; evalue=0; confidence=high |
| Rice | Os05g0186300 (OscytME2)- identity=83.1; qcov=0.933; evalue=0; confidence=high |
| GO | GO:0004471 (malate dehydrogenase (decarboxylating) (NAD+) activity); GO:0004473 (malate dehydrogenase (decarboxylating) (NADP+) activity); GO:0006090 (pyruvate metabolic process); GO:0006108 (malate metabolic process); GO:0009507 (chloroplast); GO:0051287 (NAD binding) |
| KEGG | smil00620 (Pyruvate metabolism - Salvia miltiorrhiza (redroot sage)); smil00710 (Carbon fixation by Calvin cycle - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00390 (malic); PF03949 (Malic_M) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994842 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.80000 | XP_057775925.1 |
| 2 | Mitochondrion matrix | 线粒体基质 | 0.60000 | XP_057775925.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057775925.1 |
| 4 | Chloroplast | 叶绿体 | 0.40000 | XP_057775925.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057775925.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:54390545 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr7:54390864 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A7 |
Chr7:54391008 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B11,B114,B17,B73,C30 |
Chr7:54391680 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B120,B122 |
Chr7:54391691 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B121 |
Chr7:54391732 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C14,C34 |
Chr7:54391876 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr7:54391877 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr7:54391913 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C14,C34 |
Chr7:54392121 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B49,C41 |
Chr7:54392133 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B18,C2,C56 |
Chr7:54393283 |
C |
T |
EMS_canonical_SNV | stop_gained | 10 | A18,A4,B69,B90,B92,C21,C54,C57,C83,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775925.1PF00390
malic 134-315 aa
PF03949
Malic_M 325-578 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775925.1 |
Pfam | PF00390 |
malic | Domain | 134 | 315 | 2e-79 | 266.3 | Malic enzyme, N-terminal domain |
XP_057775925.1 |
Pfam | PF03949 |
Malic_M | Domain | 325 | 578 | 2.4e-96 | 322.7 | Malic enzyme, NAD binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。