当前解析结果
SmilChr07G004237| 统一新 Gene ID | SmilChr07G004237 |
|---|---|
| 名称 | SmilChr07G004237 |
| 描述 | uncharacterized SmilChr07G004237 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 54765735 - 54770647 / + |
| NCBI Gene ID | LOC130994425 |
|---|---|
| GeneID | 130994425 |
| locus_tag | - |
| NCBI Name | LOC130994425 |
| 原始查询 | SmilChr07G004237 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0315200; species=rice; confidence=weak |
| 产物 | hit=Os08g0315200; species=rice; confidence=weak |
| Arabidopsis | -- |
| Rice | Os08g0315200- identity=33.3; qcov=0.243; evalue=1.58e-21; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004190 (aspartic-type endopeptidase activity); GO:0006508 (proteolysis); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00098 (zf-CCHC); PF03732 (PEG10_N-capsid); PF08284 (RVP_2); PF13650 (Asp_protease_2); PF13975 (gag-asp_proteas); PF19259 (Ty3_capsid); PF30863 (PRO_PEG10-RTL1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994425 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057775452.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057775452.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057775452.1 |
| 4 | Cytoplasmic granule | 细胞质颗粒 | 0.20000 | XP_057775452.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057775452.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:54765785 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B83 |
Chr7:54765789 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | C32,C54 |
Chr7:54765789 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C32,C54 |
Chr7:54765793 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B83 |
Chr7:54765815 |
AC |
A |
1bp_deletion | frameshift_variant | 23 | A3,A7,B104,B112,B19,B3,B44,B62,B72,B81,B89,B9,B91,B97,B98,B99,C13,C15,C29,C55,C56,C67,C81 |
Chr7:54765822 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C3,C70 |
Chr7:54765823 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B120,B18,C24 |
Chr7:54765845 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B16,C53 |
Chr7:54765877 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B58,C38,C4,C57,C60 |
Chr7:54765899 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A10,B124,B21,C24,C66 |
Chr7:54765921 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B58,C38,C4,C60 |
Chr7:54765945 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B122,B26 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775452.1PF03732
PEG10_N-capsid 30-107 aa
PF19259
Ty3_capsid 32-203 aa
PF00098
zf-CCHC 281-296 aa
PF08284
RVP_2 342-470 aa
PF13650
Asp_protease_2 369-452 aa
PF13975
gag-asp_proteas 369-454 aa
PF30863
PRO_PEG10-RTL1 374-470 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775452.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 30 | 107 | 1.1e-11 | 45.6 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057775452.1 |
Pfam | PF19259 |
Ty3_capsid | Domain | 32 | 203 | 2.4e-09 | 37.6 | Ty3 transposon capsid-like protein |
XP_057775452.1 |
Pfam | PF00098 |
zf-CCHC | Domain | 281 | 296 | 1.1e-05 | 26.0 | Zinc knuckle |
XP_057775452.1 |
Pfam | PF08284 |
RVP_2 | Domain | 342 | 470 | 4.2e-28 | 98.6 | Retroviral aspartyl protease |
XP_057775452.1 |
Pfam | PF13650 |
Asp_protease_2 | Domain | 369 | 452 | 1.3e-09 | 39.4 | Aspartyl protease |
XP_057775452.1 |
Pfam | PF13975 |
gag-asp_proteas | Domain | 369 | 454 | 1.2e-09 | 39.4 | gag-polyprotein putative aspartyl protease |
XP_057775452.1 |
Pfam | PF30863 |
PRO_PEG10-RTL1 | Domain | 374 | 470 | 2.7e-09 | 38.1 | PEG10/RTL1 protease domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。