Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004267`

染色体: Chr07 坐标: 55083725-55087397 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004267`
名称	SmilChr07G004267
描述	probable E3 ubiquitin-protein ligase RHB1A
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	55083725 - 55087397 / `+`

ID 对照

NCBI Gene ID	`LOC130994928`
GeneID	`130994928`
locus_tag	`-`
NCBI Name	`LOC130994928`
原始查询	`SmilChr07G004267`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable E3 ubiquitin-protein ligase RHB1A
产物	probable E3 ubiquitin-protein ligase RHB1A
Arabidopsis	`AT5G41350` (AT5G41350) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834137] identity=46.7; qcov=1.01; evalue=1.61e-55; confidence=high
Rice	`Os11g0294600` - identity=42.1; qcov=0.986; evalue=8.28e-44; confidence=medium
GO	GO:0004842 (ubiquitin-protein transferase activity)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF12861 (zf-ANAPC11); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF14634 (zf-RING_5); PF17123 (zf-RING_11)
InterPro	-
eggNOG	-
NR	GeneID:130994928

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057776078.1`
2	Endoplasmic reticulum	内质网	0.40000	`XP_057776073.1`
3	Nucleus	细胞核	0.20000	`XP_057776078.1`
4	Cell membrane	细胞膜	0.20000	`XP_057776078.1`
5	Chromosome	染色体	0.00000	`XP_057776073.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:55086009`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C67
`Chr7:55086066`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr7:55086264`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C67
`Chr7:55086635`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B51

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776073.1

265 aa

132

265

zf-rbx1

zf-RING_2

zf-RING_11

zf-RING_5

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

PF12678 zf-rbx1 158-200 aa PF13639 zf-RING_2 158-200 aa PF17123 zf-RING_11 159-187 aa PF14634 zf-RING_5 159-202 aa PF13445 zf-RING_UBOX 160-198 aa PF00097 zf-C3HC4 160-200 aa PF13923 zf-C3HC4_2 160-200 aa

XP_057776074.1

265 aa

132

265

zf-rbx1

zf-RING_2

zf-RING_11

zf-RING_5

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

XP_057776075.1

265 aa

132

265

zf-rbx1

zf-RING_2

zf-RING_11

zf-RING_5

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

XP_057776076.1

265 aa

132

265

zf-rbx1

zf-RING_2

zf-RING_11

zf-RING_5

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

XP_057776077.1

265 aa

132

265

zf-rbx1

zf-RING_2

zf-RING_11

zf-RING_5

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

XP_057776078.1

212 aa

106

212

zf-rbx1

zf-RING_2

zf-RING_11

zf-RING_5

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-ANAPC11

PF12678 zf-rbx1 158-200 aa PF13639 zf-RING_2 158-200 aa PF17123 zf-RING_11 159-187 aa PF14634 zf-RING_5 159-202 aa PF13445 zf-RING_UBOX 160-191 aa PF00097 zf-C3HC4 160-200 aa PF13923 zf-C3HC4_2 160-200 aa PF12861 zf-ANAPC11 160-206 aa

XP_057776079.1

212 aa

106

212

zf-rbx1

zf-RING_2

zf-RING_11

zf-RING_5

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-ANAPC11

XP_057776081.1

212 aa

106

212

zf-rbx1

zf-RING_2

zf-RING_11

zf-RING_5

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-ANAPC11

XP_057776082.1

212 aa

106

212

zf-rbx1

zf-RING_2

zf-RING_11

zf-RING_5

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-ANAPC11

XP_057776083.1

212 aa

106

212

zf-rbx1

zf-RING_2

zf-RING_11

zf-RING_5

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-ANAPC11

XP_057776084.1

212 aa

106

212

zf-rbx1

zf-RING_2

zf-RING_11

zf-RING_5

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-ANAPC11

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776073.1`	Pfam	`PF12678`	zf-rbx1	Domain	158	200	1.4e-09	38.8	RING-H2 zinc finger domain
`XP_057776073.1`	Pfam	`PF13639`	zf-RING_2	Domain	158	200	1.3e-12	48.5	Ring finger domain
`XP_057776073.1`	Pfam	`PF17123`	zf-RING_11	Domain	159	187	4.5e-07	30.2	RING-like zinc finger
`XP_057776073.1`	Pfam	`PF14634`	zf-RING_5	Domain	159	202	7.3e-07	29.8	zinc-RING finger domain
`XP_057776073.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	160	198	2e-06	28.4	RING-type zinc-finger
`XP_057776073.1`	Pfam	`PF00097`	zf-C3HC4	Domain	160	200	2.5e-08	34.4	Zinc finger, C3HC4 type (RING finger)
`XP_057776073.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	160	200	8.3e-09	35.8	Zinc finger, C3HC4 type (RING finger)
`XP_057776074.1`	Pfam	`PF12678`	zf-rbx1	Domain	158	200	1.4e-09	38.8	RING-H2 zinc finger domain
`XP_057776074.1`	Pfam	`PF13639`	zf-RING_2	Domain	158	200	1.3e-12	48.5	Ring finger domain
`XP_057776074.1`	Pfam	`PF17123`	zf-RING_11	Domain	159	187	4.5e-07	30.2	RING-like zinc finger
`XP_057776074.1`	Pfam	`PF14634`	zf-RING_5	Domain	159	202	7.3e-07	29.8	zinc-RING finger domain
`XP_057776074.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	160	198	2e-06	28.4	RING-type zinc-finger
`XP_057776074.1`	Pfam	`PF00097`	zf-C3HC4	Domain	160	200	2.5e-08	34.4	Zinc finger, C3HC4 type (RING finger)
`XP_057776074.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	160	200	8.3e-09	35.8	Zinc finger, C3HC4 type (RING finger)
`XP_057776075.1`	Pfam	`PF12678`	zf-rbx1	Domain	158	200	1.4e-09	38.8	RING-H2 zinc finger domain
`XP_057776075.1`	Pfam	`PF13639`	zf-RING_2	Domain	158	200	1.3e-12	48.5	Ring finger domain
`XP_057776075.1`	Pfam	`PF17123`	zf-RING_11	Domain	159	187	4.5e-07	30.2	RING-like zinc finger
`XP_057776075.1`	Pfam	`PF14634`	zf-RING_5	Domain	159	202	7.3e-07	29.8	zinc-RING finger domain
`XP_057776075.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	160	198	2e-06	28.4	RING-type zinc-finger
`XP_057776075.1`	Pfam	`PF00097`	zf-C3HC4	Domain	160	200	2.5e-08	34.4	Zinc finger, C3HC4 type (RING finger)
`XP_057776075.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	160	200	8.3e-09	35.8	Zinc finger, C3HC4 type (RING finger)
`XP_057776076.1`	Pfam	`PF12678`	zf-rbx1	Domain	158	200	1.4e-09	38.8	RING-H2 zinc finger domain
`XP_057776076.1`	Pfam	`PF13639`	zf-RING_2	Domain	158	200	1.3e-12	48.5	Ring finger domain
`XP_057776076.1`	Pfam	`PF17123`	zf-RING_11	Domain	159	187	4.5e-07	30.2	RING-like zinc finger
`XP_057776076.1`	Pfam	`PF14634`	zf-RING_5	Domain	159	202	7.3e-07	29.8	zinc-RING finger domain
`XP_057776076.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	160	198	2e-06	28.4	RING-type zinc-finger
`XP_057776076.1`	Pfam	`PF00097`	zf-C3HC4	Domain	160	200	2.5e-08	34.4	Zinc finger, C3HC4 type (RING finger)
`XP_057776076.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	160	200	8.3e-09	35.8	Zinc finger, C3HC4 type (RING finger)
`XP_057776077.1`	Pfam	`PF12678`	zf-rbx1	Domain	158	200	1.4e-09	38.8	RING-H2 zinc finger domain
`XP_057776077.1`	Pfam	`PF13639`	zf-RING_2	Domain	158	200	1.3e-12	48.5	Ring finger domain
`XP_057776077.1`	Pfam	`PF17123`	zf-RING_11	Domain	159	187	4.5e-07	30.2	RING-like zinc finger
`XP_057776077.1`	Pfam	`PF14634`	zf-RING_5	Domain	159	202	7.3e-07	29.8	zinc-RING finger domain
`XP_057776077.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	160	198	2e-06	28.4	RING-type zinc-finger
`XP_057776077.1`	Pfam	`PF00097`	zf-C3HC4	Domain	160	200	2.5e-08	34.4	Zinc finger, C3HC4 type (RING finger)
`XP_057776077.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	160	200	8.3e-09	35.8	Zinc finger, C3HC4 type (RING finger)
`XP_057776078.1`	Pfam	`PF12678`	zf-rbx1	Domain	158	200	9.5e-10	39.3	RING-H2 zinc finger domain
`XP_057776078.1`	Pfam	`PF13639`	zf-RING_2	Domain	158	200	9e-13	49.0	Ring finger domain
`XP_057776078.1`	Pfam	`PF17123`	zf-RING_11	Domain	159	187	3.3e-07	30.6	RING-like zinc finger
`XP_057776078.1`	Pfam	`PF14634`	zf-RING_5	Domain	159	202	5.1e-07	30.3	zinc-RING finger domain
`XP_057776078.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	160	191	2.3e-07	31.4	RING-type zinc-finger
`XP_057776078.1`	Pfam	`PF00097`	zf-C3HC4	Domain	160	200	1.8e-08	34.8	Zinc finger, C3HC4 type (RING finger)
`XP_057776078.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	160	200	2.8e-09	37.4	Zinc finger, C3HC4 type (RING finger)
`XP_057776078.1`	Pfam	`PF12861`	zf-ANAPC11	Domain	160	206	3.1e-06	27.8	Anaphase-promoting complex subunit 11 RING-H2 finger
`XP_057776079.1`	Pfam	`PF12678`	zf-rbx1	Domain	158	200	9.5e-10	39.3	RING-H2 zinc finger domain
`XP_057776079.1`	Pfam	`PF13639`	zf-RING_2	Domain	158	200	9e-13	49.0	Ring finger domain
`XP_057776079.1`	Pfam	`PF17123`	zf-RING_11	Domain	159	187	3.3e-07	30.6	RING-like zinc finger
`XP_057776079.1`	Pfam	`PF14634`	zf-RING_5	Domain	159	202	5.1e-07	30.3	zinc-RING finger domain
`XP_057776079.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	160	191	2.3e-07	31.4	RING-type zinc-finger
`XP_057776079.1`	Pfam	`PF00097`	zf-C3HC4	Domain	160	200	1.8e-08	34.8	Zinc finger, C3HC4 type (RING finger)
`XP_057776079.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	160	200	2.8e-09	37.4	Zinc finger, C3HC4 type (RING finger)
`XP_057776079.1`	Pfam	`PF12861`	zf-ANAPC11	Domain	160	206	3.1e-06	27.8	Anaphase-promoting complex subunit 11 RING-H2 finger
`XP_057776081.1`	Pfam	`PF12678`	zf-rbx1	Domain	158	200	9.5e-10	39.3	RING-H2 zinc finger domain
`XP_057776081.1`	Pfam	`PF13639`	zf-RING_2	Domain	158	200	9e-13	49.0	Ring finger domain
`XP_057776081.1`	Pfam	`PF17123`	zf-RING_11	Domain	159	187	3.3e-07	30.6	RING-like zinc finger
`XP_057776081.1`	Pfam	`PF14634`	zf-RING_5	Domain	159	202	5.1e-07	30.3	zinc-RING finger domain
`XP_057776081.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	160	191	2.3e-07	31.4	RING-type zinc-finger
`XP_057776081.1`	Pfam	`PF00097`	zf-C3HC4	Domain	160	200	1.8e-08	34.8	Zinc finger, C3HC4 type (RING finger)
`XP_057776081.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	160	200	2.8e-09	37.4	Zinc finger, C3HC4 type (RING finger)
`XP_057776081.1`	Pfam	`PF12861`	zf-ANAPC11	Domain	160	206	3.1e-06	27.8	Anaphase-promoting complex subunit 11 RING-H2 finger
`XP_057776082.1`	Pfam	`PF12678`	zf-rbx1	Domain	158	200	9.5e-10	39.3	RING-H2 zinc finger domain
`XP_057776082.1`	Pfam	`PF13639`	zf-RING_2	Domain	158	200	9e-13	49.0	Ring finger domain
`XP_057776082.1`	Pfam	`PF17123`	zf-RING_11	Domain	159	187	3.3e-07	30.6	RING-like zinc finger
`XP_057776082.1`	Pfam	`PF14634`	zf-RING_5	Domain	159	202	5.1e-07	30.3	zinc-RING finger domain
`XP_057776082.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	160	191	2.3e-07	31.4	RING-type zinc-finger
`XP_057776082.1`	Pfam	`PF00097`	zf-C3HC4	Domain	160	200	1.8e-08	34.8	Zinc finger, C3HC4 type (RING finger)
`XP_057776082.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	160	200	2.8e-09	37.4	Zinc finger, C3HC4 type (RING finger)
`XP_057776082.1`	Pfam	`PF12861`	zf-ANAPC11	Domain	160	206	3.1e-06	27.8	Anaphase-promoting complex subunit 11 RING-H2 finger
`XP_057776083.1`	Pfam	`PF12678`	zf-rbx1	Domain	158	200	9.5e-10	39.3	RING-H2 zinc finger domain
`XP_057776083.1`	Pfam	`PF13639`	zf-RING_2	Domain	158	200	9e-13	49.0	Ring finger domain
`XP_057776083.1`	Pfam	`PF17123`	zf-RING_11	Domain	159	187	3.3e-07	30.6	RING-like zinc finger
`XP_057776083.1`	Pfam	`PF14634`	zf-RING_5	Domain	159	202	5.1e-07	30.3	zinc-RING finger domain
`XP_057776083.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	160	191	2.3e-07	31.4	RING-type zinc-finger
`XP_057776083.1`	Pfam	`PF00097`	zf-C3HC4	Domain	160	200	1.8e-08	34.8	Zinc finger, C3HC4 type (RING finger)
`XP_057776083.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	160	200	2.8e-09	37.4	Zinc finger, C3HC4 type (RING finger)
`XP_057776083.1`	Pfam	`PF12861`	zf-ANAPC11	Domain	160	206	3.1e-06	27.8	Anaphase-promoting complex subunit 11 RING-H2 finger
`XP_057776084.1`	Pfam	`PF12678`	zf-rbx1	Domain	158	200	9.5e-10	39.3	RING-H2 zinc finger domain
`XP_057776084.1`	Pfam	`PF13639`	zf-RING_2	Domain	158	200	9e-13	49.0	Ring finger domain
`XP_057776084.1`	Pfam	`PF17123`	zf-RING_11	Domain	159	187	3.3e-07	30.6	RING-like zinc finger
`XP_057776084.1`	Pfam	`PF14634`	zf-RING_5	Domain	159	202	5.1e-07	30.3	zinc-RING finger domain
`XP_057776084.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	160	191	2.3e-07	31.4	RING-type zinc-finger
`XP_057776084.1`	Pfam	`PF00097`	zf-C3HC4	Domain	160	200	1.8e-08	34.8	Zinc finger, C3HC4 type (RING finger)
`XP_057776084.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	160	200	2.8e-09	37.4	Zinc finger, C3HC4 type (RING finger)
`XP_057776084.1`	Pfam	`PF12861`	zf-ANAPC11	Domain	160	206	3.1e-06	27.8	Anaphase-promoting complex subunit 11 RING-H2 finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

11 records

下载 cDNA FASTA

XM_057920092.1
CCATATAAAATAAATAACATAATTTGTTGAATTTTCCAAAATTCGTGAGGCCTTCTCTCTGGAGCAGTGAAGTCAAGCACAAATATTTGTGCAGTCACCATCTCTGCTGATTCAAAATCAACTCCACCATTAGCAGAGATTAAAGCAATGATCAGAGTGCCAGTGTCTTCAGGTGGATGAATACGATAATTTTACAGAGATGGGAGGTTGCTGCTGTTGCTGTGCGTCTGATGTAACTGAGCGTAACAGGTCACCTCCAT...

XM_057920099.1
CCATATAAAATAAATAACATAATTTGTTGAATTTTCCAAAATTCGTGAGGCCTTCTCTCTGGAGCAGTGAAGTCAAGCACAAATATTTGTGCAGTCACCATCTCTGCTGATTCAAAATCAACTCCACCATTAGCAGAGATTAAAGCAATGATCAGAGTGCCAGTGTCTTCAGGTGGATGAATACGATAATTTTACAGAGATGGGAGGTTGCTGCTGTTGCTGTGCGTCTGATGTAACTGAGCGTAACAGGTCACCTCCAT...

CDS

11 records

下载 CDS FASTA

LOC130994928
ATGGGAGGTTGCTGCTGTTGCTGTGCGTCTGATGTAACTGAGCGTAACAGGTCACCTCCATTCTTTCATCATCCAGTATCTGAAGAGCACGAACCCTTATCATCCCATAATGAAATCTCTACCTTCTCTACCGGGCTATTGGTTGATACAAATCTAGACACGTCAGTTCCAGACACTTACCGACCACCTCCTGCGCCCATACCTTATGAAACATATATAGGCCGCCCATCTACACCGTCCAGGAATCAAGAAGGATCTGG...

Protein

11 records

下载 Protein FASTA

XP_057776073.1
MGGCCCCCASDVTERNRSPPFFHHPVSEEHEPLSSHNEISTFSTGLLVDTNLDTSVPDTYRPPPAPIPYETYIGRPSTPSRNQEGSGHEVEVALGITNVVRVEDINNGNTLETKVKKQPDENEEKDIDLEASKLMEDESSDELKKSSKLLDPPIIDEDDCPICLEEYVEENPKILTKCDHHFHLACILEWMERSDICPVCDQVEIVARHIVTIKNLLLFQWNILPILKILNICFSECRKWLSVLLQEFSYCKYCIMSYLL...

XP_057776074.1
MGGCCCCCASDVTERNRSPPFFHHPVSEEHEPLSSHNEISTFSTGLLVDTNLDTSVPDTYRPPPAPIPYETYIGRPSTPSRNQEGSGHEVEVALGITNVVRVEDINNGNTLETKVKKQPDENEEKDIDLEASKLMEDESSDELKKSSKLLDPPIIDEDDCPICLEEYVEENPKILTKCDHHFHLACILEWMERSDICPVCDQVEIVARHIVTIKNLLLFQWNILPILKILNICFSECRKWLSVLLQEFSYCKYCIMSYLL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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