当前解析结果
SmilChr07G004268| 统一新 Gene ID | SmilChr07G004268 |
|---|---|
| 名称 | SmilChr07G004268 |
| 描述 | beta-adaptin-like protein C |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 55091424 - 55100179 / - |
| NCBI Gene ID | LOC130994808 |
|---|---|
| GeneID | 130994808 |
| locus_tag | - |
| NCBI Name | LOC130994808 |
| 原始查询 | SmilChr07G004268 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | beta-adaptin-like protein C |
| 产物 | beta-adaptin-like protein C |
| Arabidopsis | AT4G23460 (AT4G23460)Adaptin family protein [Source:NCBI gene (formerly Entrezgene);Acc:828445] identity=86.8; qcov=1; evalue=0; confidence=high |
| Rice | Os03g0355600- identity=86.6; qcov=1; evalue=0; confidence=high |
| GO | GO:0006886 (intracellular protein transport); GO:0016192 (vesicle-mediated transport); GO:0030117 (membrane coat); GO:0030131 (clathrin adaptor complex); GO:0030276 (clathrin binding) |
| KEGG | smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01602 (Adaptin_N); PF02883 (Alpha_adaptinC2); PF02985 (HEAT); PF09066 (B2-adapt-app_C); PF12717 (Cnd1); PF13646 (HEAT_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994808 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057775861.1 |
| 2 | Cytoplasmic vesicle | 细胞质囊泡 | 0.80000 | XP_057775861.1 |
| 3 | Clathrin-coated vesicle | Clathrin-coated vesicle | 0.80000 | XP_057775861.1 |
| 4 | Trans-golgi network | Trans-golgi network | 0.80000 | XP_057775861.1 |
| 5 | Vesicle | 囊泡 | 0.80000 | XP_057775861.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:55091890 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B136,B139 |
Chr7:55091938 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B108,B140,C1,C39 |
Chr7:55092315 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C58 |
Chr7:55092561 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B140,C48 |
Chr7:55092932 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:55094232 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C36,C6 |
Chr7:55094433 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,C25 |
Chr7:55095840 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A5,C25 |
Chr7:55099954 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B41,C61 |
Chr7:55100008 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775861.1PF01602
Adaptin_N 14-534 aa
PF13646
HEAT_2 98-152 aa
PF12717
Cnd1 103-265 aa
PF02985
HEAT 125-151 aa
PF02883
Alpha_adaptinC2 676-773 aa
PF09066
B2-adapt-app_C 785-893 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775861.1 |
Pfam | PF01602 |
Adaptin_N | Repeat | 14 | 534 | 2.7e-169 | 564.8 | Adaptin N terminal region |
XP_057775861.1 |
Pfam | PF13646 |
HEAT_2 | Repeat | 98 | 152 | 1.6e-13 | 51.5 | HEAT repeats |
XP_057775861.1 |
Pfam | PF12717 |
Cnd1 | Repeat | 103 | 265 | 2.2e-66 | 223.6 | non-SMC mitotic condensation complex subunit 1 |
XP_057775861.1 |
Pfam | PF02985 |
HEAT | Repeat | 125 | 151 | 1.2e-11 | 44.4 | HEAT repeat |
XP_057775861.1 |
Pfam | PF02883 |
Alpha_adaptinC2 | Domain | 676 | 773 | 2e-10 | 41.6 | Adaptin C-terminal domain |
XP_057775861.1 |
Pfam | PF09066 |
B2-adapt-app_C | Domain | 785 | 893 | 4.7e-30 | 104.6 | Beta2-adaptin appendage, C-terminal sub-domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。