当前解析结果
SmilChr07G004275| 统一新 Gene ID | SmilChr07G004275 |
|---|---|
| 名称 | SmilChr07G004275 |
| 描述 | receptor like protein 22-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 55228473 - 55229388 / + |
| NCBI Gene ID | LOC130994434 |
|---|---|
| GeneID | 130994434 |
| locus_tag | - |
| NCBI Name | LOC130994434 |
| 原始查询 | SmilChr07G004275 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor like protein 22-like |
| 产物 | receptor like protein 22-like |
| Arabidopsis | AT2G32660 (RLP22)receptor like protein 22 [Source:NCBI gene (formerly Entrezgene);Acc:817826] identity=34.4; qcov=1.15; evalue=2.66e-38; confidence=low |
| Rice | Os12g0221700- identity=32.6; qcov=1.08; evalue=5.86e-34; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994434 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057775459.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057775459.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057775459.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057775459.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057775459.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:55228482 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C58 |
Chr7:55228486 |
CTT |
C |
2bp_deletion | frameshift_variant | 3 | B32,C15,C29 |
Chr7:55228486 |
CTT |
C |
2bp_deletion | CDS_variant | 3 | B32,C15,C29 |
Chr7:55228490 |
G |
GAC |
2bp_insertion | frameshift_variant | 3 | B32,C15,C29 |
Chr7:55228490 |
G |
GAC |
2bp_insertion | CDS_variant | 3 | B32,C15,C29 |
Chr7:55228542 |
CTA |
C |
2bp_deletion | frameshift_variant | 6 | A7,B105,B109,B72,B97,C45 |
Chr7:55228692 |
C |
CAA |
2bp_insertion | frameshift_variant | 9 | B118,B131,B137,B20,B61,B63,B71,B96,C23 |
Chr7:55228693 |
GTT |
G |
2bp_deletion | frameshift_variant | 10 | B118,B131,B137,B20,B61,B63,B71,B96,C23,C37 |
Chr7:55229018 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A10 |
Chr7:55229072 |
GA |
G |
1bp_deletion | frameshift_variant | 2 | B41,B62 |
Chr7:55229072 |
GA |
G |
1bp_deletion | CDS_variant | 2 | B41,B62 |
Chr7:55229132 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A10,A7,C3,C69 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057775459.1PF00560
LRR_1 33-50 aa
PF00560
LRR_1 97-118 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775459.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 33 | 50 | 1.1e-10 | 40.2 | Leucine Rich Repeat |
XP_057775459.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 97 | 118 | 1.1e-10 | 40.2 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。