Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004278`

染色体: Chr07 坐标: 55314244-55320169 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004278`
名称	SmilChr07G004278
描述	uncharacterized SmilChr07G004278
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	55314244 - 55320169 / `-`

ID 对照

NCBI Gene ID	`LOC130994820`
GeneID	`130994820`
locus_tag	`-`
NCBI Name	`LOC130994820`
原始查询	`SmilChr07G004278`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcriptional factor B3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:817004]; symbol=AT2G24680; hit=AT2G24680; species=arabidopsis; confidence=weak
产物	transcriptional factor B3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:817004]; symbol=AT2G24680; hit=AT2G24680; species=arabidopsis; confidence=weak
Arabidopsis	`AT2G24680` (AT2G24680) transcriptional factor B3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:817004] identity=23; qcov=0.341; evalue=6.11e-11; confidence=weak
Rice	`-` -
GO	GO:0003677 (DNA binding); GO:0006508 (proteolysis); GO:0008234 (cysteine-type peptidase activity)
KEGG	-
Pfam	PF02362 (B3); PF02902 (Peptidase_C48)
InterPro	-
eggNOG	-
NR	GeneID:130994820

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057775875.1`
2	Chromosome	染色体	0.20000	`XP_057775875.1`
3	Centromere	着丝粒	0.00000	`XP_057775875.1`
4	Chromatin	染色质	0.00000	`XP_057775875.1`
5	Telomere	端粒	0.00000	`XP_057775875.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:55315485`	`G`	`A`	EMS_canonical_SNV	stop_gained	7	B102,B11,C14,C3,C83,C9,D1
`Chr7:55315491`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B135,B139,B28,C80,D2
`Chr7:55315643`	`TGA`	`T`	2bp_deletion	frameshift_variant	1	C82
`Chr7:55315643`	`TGA`	`T`	2bp_deletion	CDS_variant	1	C82
`Chr7:55315646`	`T`	`TTC`	2bp_insertion	frameshift_variant	1	C82
`Chr7:55315646`	`T`	`TTC`	2bp_insertion	CDS_variant	1	C82
`Chr7:55315653`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C58
`Chr7:55315656`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B87,C38,C4,C43
`Chr7:55315659`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B68,C38,C4,C43
`Chr7:55315661`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr7:55315716`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B112,B2,B88
`Chr7:55315833`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B104,B66,B88,C58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775875.1

728 aa

364

728

Peptidase_C48

PF02362 B3 49-129 aa PF02362 B3 172-257 aa PF02902 Peptidase_C48 545-714 aa

XP_057775876.1

728 aa

364

728

Peptidase_C48

PF02362 B3 49-129 aa PF02362 B3 172-257 aa PF02902 Peptidase_C48 545-714 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775875.1`	Pfam	`PF02362`	B3	Domain	49	129	2.5e-26	92.3	B3 DNA binding domain
`XP_057775875.1`	Pfam	`PF02362`	B3	Domain	172	257	2.5e-26	92.3	B3 DNA binding domain
`XP_057775875.1`	Pfam	`PF02902`	Peptidase_C48	Domain	545	714	1.6e-07	32.1	Ulp1 protease family, C-terminal catalytic domain
`XP_057775876.1`	Pfam	`PF02362`	B3	Domain	49	129	2.5e-26	92.3	B3 DNA binding domain
`XP_057775876.1`	Pfam	`PF02362`	B3	Domain	172	257	2.5e-26	92.3	B3 DNA binding domain
`XP_057775876.1`	Pfam	`PF02902`	Peptidase_C48	Domain	545	714	1.6e-07	32.1	Ulp1 protease family, C-terminal catalytic domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057919893.1
TGTCGATAATAAAGTTTTTGCAGGAGCGACTGCAAAAGTAAGAGAGAGAAAGGCGGGAAAATACTAGAAACGGAAACATGAGCAGTCTGAGAATCGAGAAAGATGGGAAGCTCAGGCCACTGATGAGGAAACAAGTAAAGATGCATTCAATATCAACAAAATTAGGGGAATCACAACAAAGGAGGAGAAGAAGAAGGAAAAAGAGAAGAGGTTTAGCTCACGCGAAATCAGAGGCTCCTAGAGAGAGATTCAGAGGTGGT...

XM_057919892.1
TGTCGATAATAAAGTTTTTGCAGGAGCGACTGCAAAAGTAAGAGAGAGAAAGGCGGGAAAATACTAGAAACGGAAACATGAGCAGTCTGAGAATCGAGAAAGATGGGAAGCTCAGGCCACTGATGAGGAAACAAGTAAAGATGCATTCAATATCAACAAAATTAGGGGAATCACAACAAAGGAGGAGAAGAAGAAGGAAAAAGAGAAGAGGTTTAGCTCACGCGAAATCAGAGGCTCCTAGAGAGAGATTCAGAGGTGGT...

CDS

2 records

下载 CDS FASTA

LOC130994820
ATGGACACCCCTCCTCATCCTCATCGTCGCCGAGTTCCGAGCACACGAAGAAACAAGAAACTCGAAGATGACGCTGAAATCTCCGAACCGGGACTGGCTGTTCCACCAGAAATTCCTTGTTTTGCGTGGAGAGCAAAACCTGCCAAAAAAAATGTGTTGTATCTCCCCAAAAGAGTCATAGAATACTACCATCTTAAGATCCCAAATGTCATATCCTTCGTCGATGAACAAGGGAGAGAATGGGATGTGACTGTCTCAAA...

Protein

2 records

下载 Protein FASTA

XP_057775875.1
MDTPPHPHRRRVPSTRRNKKLEDDAEISEPGLAVPPEIPCFAWRAKPAKKNVLYLPKRVIEYYHLKIPNVISFVDEQGREWDVTVSKDKGSYRCSAGGWKRVCEANLIDIGDVCIFEFMQGRIDLYIRIRINRAHELRSKATHCCDGDIFMSGQAFRPENPHFVWRVLTEARRRRLILPRTIIKTYNLKIPNIISLVDERGKKWETKILKRRSGDLAFPESVWRSYCDANLVEIGDRCICEYIEEQSGLSIFVRVSRAPK...

XP_057775876.1
MDTPPHPHRRRVPSTRRNKKLEDDAEISEPGLAVPPEIPCFAWRAKPAKKNVLYLPKRVIEYYHLKIPNVISFVDEQGREWDVTVSKDKGSYRCSAGGWKRVCEANLIDIGDVCIFEFMQGRIDLYIRIRINRAHELRSKATHCCDGDIFMSGQAFRPENPHFVWRVLTEARRRRLILPRTIIKTYNLKIPNIISLVDERGKKWETKILKRRSGDLAFPESVWRSYCDANLVEIGDRCICEYIEEQSGLSIFVRVSRAPK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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