Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004285`

染色体: Chr07 坐标: 55423944-55432898 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004285`
名称	SmilChr07G004285
描述	receptor-like protein kinase HSL1
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	55423944 - 55432898 / `+`

ID 对照

NCBI Gene ID	`LOC130994797`
GeneID	`130994797`
locus_tag	`-`
NCBI Name	`LOC130994797`
原始查询	`SmilChr07G004285`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor-like protein kinase HSL1
产物	receptor-like protein kinase HSL1
Arabidopsis	`AT5G25930` (AT5G25930) kinase family with leucine-rich repeat domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:832662] identity=56.7; qcov=0.995; evalue=0; confidence=high
Rice	`Os06g0557100` - identity=46.9; qcov=0.98; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0033612 (receptor serine/threonine kinase binding)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:130994797

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057775838.1`
2	Nucleus	细胞核	0.00000	`XP_057775838.1`
3	Chromosome	染色体	0.00000	`XP_057775838.1`
4	Centromere	着丝粒	0.00000	`XP_057775838.1`
5	Chromatin	染色质	0.00000	`XP_057775838.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:55424212`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B50,C14,C42
`Chr7:55424246`	`TG`	`T`	1bp_deletion	frameshift_variant	3	B50,C14,C42
`Chr7:55424246`	`TG`	`T`	1bp_deletion	CDS_variant	3	B50,C14,C42
`Chr7:55424283`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A16,B130,B26,B27,C47
`Chr7:55424341`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B133
`Chr7:55424367`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A13
`Chr7:55424479`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B23,C53,D2
`Chr7:55424503`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B45,B50,C14,C42
`Chr7:55424530`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C54
`Chr7:55424534`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B50,C14,C42
`Chr7:55424595`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B40,B94,C62
`Chr7:55424722`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A8,B3,B81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775838.1

1015 aa

508

1015

LRRNT_2

LRR_14

LRR_8

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 28-64 aa PF23598 LRR_14 84-218 aa PF13855 LRR_8 90-150 aa PF00560 LRR_1 91-113 aa PF00560 LRR_1 115-137 aa PF00560 LRR_1 139-161 aa PF00560 LRR_1 236-255 aa PF00560 LRR_1 260-282 aa PF00560 LRR_1 283-305 aa PF00560 LRR_1 403-423 aa PF00560 LRR_1 449-467 aa PF00560 LRR_1 498-517 aa PF00560 LRR_1 521-543 aa PF13855 LRR_8 521-579 aa PF00560 LRR_1 546-567 aa PF00560 LRR_1 568-590 aa PF00069 Pkinase 686-912 aa PF07714 PK_Tyr_Ser-Thr 687-964 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775838.1`	Pfam	`PF08263`	LRRNT_2	Family	28	64	2.2e-06	28.6	Leucine rich repeat N-terminal domain
`XP_057775838.1`	Pfam	`PF23598`	LRR_14	Repeat	84	218	3e-33	115.8	Leucine-rich repeat region
`XP_057775838.1`	Pfam	`PF13855`	LRR_8	Repeat	90	150	2.4e-44	149.6	Leucine rich repeat
`XP_057775838.1`	Pfam	`PF00560`	LRR_1	Repeat	91	113	3.7e-57	178.6	Leucine Rich Repeat
`XP_057775838.1`	Pfam	`PF00560`	LRR_1	Repeat	115	137	3.7e-57	178.6	Leucine Rich Repeat
`XP_057775838.1`	Pfam	`PF00560`	LRR_1	Repeat	139	161	3.7e-57	178.6	Leucine Rich Repeat
`XP_057775838.1`	Pfam	`PF00560`	LRR_1	Repeat	236	255	3.7e-57	178.6	Leucine Rich Repeat
`XP_057775838.1`	Pfam	`PF00560`	LRR_1	Repeat	260	282	3.7e-57	178.6	Leucine Rich Repeat
`XP_057775838.1`	Pfam	`PF00560`	LRR_1	Repeat	283	305	3.7e-57	178.6	Leucine Rich Repeat
`XP_057775838.1`	Pfam	`PF00560`	LRR_1	Repeat	403	423	3.7e-57	178.6	Leucine Rich Repeat
`XP_057775838.1`	Pfam	`PF00560`	LRR_1	Repeat	449	467	3.7e-57	178.6	Leucine Rich Repeat
`XP_057775838.1`	Pfam	`PF00560`	LRR_1	Repeat	498	517	3.7e-57	178.6	Leucine Rich Repeat
`XP_057775838.1`	Pfam	`PF00560`	LRR_1	Repeat	521	543	3.7e-57	178.6	Leucine Rich Repeat
`XP_057775838.1`	Pfam	`PF13855`	LRR_8	Repeat	521	579	2.4e-44	149.6	Leucine rich repeat
`XP_057775838.1`	Pfam	`PF00560`	LRR_1	Repeat	546	567	3.7e-57	178.6	Leucine Rich Repeat
`XP_057775838.1`	Pfam	`PF00560`	LRR_1	Repeat	568	590	3.7e-57	178.6	Leucine Rich Repeat
`XP_057775838.1`	Pfam	`PF00069`	Pkinase	Domain	686	912	6.9e-45	154.2	Protein kinase domain
`XP_057775838.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	687	964	6.5e-41	141.1	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057919855.1
CCAATATTATCCCATACATCATCGCAACCAATGCCAATTTATTTAATAATTATTTTTTTAACAGAAAACCAAGTTTCATTTATATATCCCATTTGTCCAAAGTTGACCGATCTCACAAACACACCACACTAAAAAACTCAAAAAACTTCTCAGCTCCCTCCAATTCCCACCGCCGCCGCCGTCAAATGACCAAAATACCCTTCCTCCACCTCCTCCTCCTCCTCTCTTCCCTGCCCATTCTCGTCATTTCACAGCAATTC...

CDS

1 records

下载 CDS FASTA

LOC130994797
ATGACCAAAATACCCTTCCTCCACCTCCTCCTCCTCCTCTCTTCCCTGCCCATTCTCGTCATTTCACAGCAATTCTCCACCGCCGATAGAGCCATCCTTCTCAACATCAAACAGCAATGGGGGGACCCACCAATCCTCCACCACTGGAACTCCAGCTCGTCTCCCTGCGACTGGCCGGAAATCCAATGCTCCGGCGGCTCCGTCACCGGAGTCATCCTCAGCGGCTACAACCTCAACGGCACCGTTCCGGAATCCATCTC...

Protein

1 records

下载 Protein FASTA

XP_057775838.1
MTKIPFLHLLLLLSSLPILVISQQFSTADRAILLNIKQQWGDPPILHHWNSSSSPCDWPEIQCSGGSVTGVILSGYNLNGTVPESISSLRNLTVLYLSFNNFFEDFPKTILNCSNLQYLDLSQNLFEGKIPVEIGRLKQLRLLDLSGNNFAGDIPPAIGELDELITLNLYMNLFNGSYPKEISKLSNLVSLRLAYNDLAPAEIPPEFGNLTKLEYLWMTEANVIGVLPQSFANLSSLQHLDLSVNELSGEIPHGLFLLKN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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