Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G004293

染色体: Chr07 坐标: 55485490-55488047 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G004293
名称SmilChr07G004293
描述serine/threonine-protein kinase Aurora-1
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向55485490 - 55488047 / -

ID 对照

NCBI Gene IDLOC130994922
GeneID130994922
locus_tag-
NCBI NameLOC130994922
原始查询SmilChr07G004293

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述serine/threonine-protein kinase Aurora-1
产物serine/threonine-protein kinase Aurora-1
ArabidopsisAT4G32830 (AUR1)
ataurora1 [Source:NCBI gene (formerly Entrezgene);Acc:829419]
identity=88.8; qcov=1; evalue=0; confidence=high
RiceOs01g0191800
-
identity=85.3; qcov=0.997; evalue=0; confidence=high
GOGO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0005876 (spindle microtubule); GO:0006468 (protein phosphorylation); GO:0007052 (mitotic spindle organization); GO:0031616 (spindle pole centrosome); GO:0032133 (chromosome passenger complex); GO:0032465 (regulation of cytokinesis); GO:0051233 (spindle midzone)
KEGG-
PfamPF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro-
eggNOG-
NRGeneID:130994922

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057776052.1
2 Cytosol 细胞质基质 1.00000 XP_057776052.1
3 Cytoplasm 细胞质 0.80000 XP_057776052.1
4 Midbody Midbody 0.60000 XP_057776052.1
5 Spindle Spindle 0.40000 XP_057776052.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:55485807 G A EMS_canonical_SNV CDS_variant 2 A13,A6
Chr7:55485955 C T EMS_canonical_SNV CDS_variant 4 B134,B34,B64,C27
Chr7:55486181 G A EMS_canonical_SNV CDS_variant 3 B105,B129,C10
Chr7:55486273 C T EMS_canonical_SNV CDS_variant 4 B105,B107,B129,C10
Chr7:55486677 GC G 1bp_deletion frameshift_variant 1 A9
Chr7:55486677 GC G 1bp_deletion CDS_variant 1 A9
Chr7:55487031 G A EMS_canonical_SNV CDS_variant 1 D11
Chr7:55487061 G A EMS_canonical_SNV CDS_variant 4 C11,C40,C69,C70
Chr7:55487148 C T EMS_canonical_SNV CDS_variant 4 B105,B107,B129,C10
Chr7:55487474 C T EMS_canonical_SNV CDS_variant 2 A6,B88
Chr7:55487884 G A EMS_canonical_SNV CDS_variant 1 B95

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057776052.1
293 aa
N
1
146
293
Pkinase
PK_Tyr_Ser-Thr
C
PF00069 Pkinase 31-281 aa PF07714 PK_Tyr_Ser-Thr 32-277 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057776052.1 Pfam PF00069 Pkinase Domain 31 281 1.6e-74 251.3 Protein kinase domain
XP_057776052.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 32 277 8.7e-42 143.9 Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057920069.1
GCTCTACTGTTGAAATATGACCGTTGCTATATTACGCCAATAAAAACCAAAAACATCCTTCCTCTCTCTTCTCTCTCTACATATTTCAAATACATTTTGCAGCGTTTCGTCTCTCTCTCTCTCACGTCCACTGTGTGAGGTTTCTGCGTTTTTCCGGAGATGGCGATCGCGGCGGAGTCTCAACAGGAGCACAAGAATTCTTCAGAGAGCACAGCAGCAGAGAGAAAGAAATGGACCCTAAATGACTTCGACATCGGAAA...

CDS

1 records

下载 CDS FASTA
LOC130994922
ATGGCGATCGCGGCGGAGTCTCAACAGGAGCACAAGAATTCTTCAGAGAGCACAGCAGCAGAGAGAAAGAAATGGACCCTAAATGACTTCGACATCGGAAAGCCTCTTGGCCGAGGAAAGTTTGGGCATGTATATCTCGCTAGAGAAAAGAGGAGCAATCACGTTATCGCACTGAAGGTCTTGTTTAAGAGCCAGCTTAAAGAGTCTCAGGTTGAGCACCAGCTTCGTCGTGAAGTCGAGATACAGAGTCATCTTCGACA...

Protein

1 records

下载 Protein FASTA
XP_057776052.1
MAIAAESQQEHKNSSESTAAERKKWTLNDFDIGKPLGRGKFGHVYLAREKRSNHVIALKVLFKSQLKESQVEHQLRREVEIQSHLRHPNILRLYGYFYDQKRVYLILEYAAKGELYKELQKCKYFSERRAATYIASLARALIYCHGKHVIHRDIKPENLLVGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGILCYEFLYGLPPFEAKEHADTYRRIIQVDLKFPSKPVVSSAAKDLISQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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