当前解析结果
SmilChr07G004293| 统一新 Gene ID | SmilChr07G004293 |
|---|---|
| 名称 | SmilChr07G004293 |
| 描述 | serine/threonine-protein kinase Aurora-1 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 55485490 - 55488047 / - |
| NCBI Gene ID | LOC130994922 |
|---|---|
| GeneID | 130994922 |
| locus_tag | - |
| NCBI Name | LOC130994922 |
| 原始查询 | SmilChr07G004293 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine/threonine-protein kinase Aurora-1 |
| 产物 | serine/threonine-protein kinase Aurora-1 |
| Arabidopsis | AT4G32830 (AUR1)ataurora1 [Source:NCBI gene (formerly Entrezgene);Acc:829419] identity=88.8; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0191800- identity=85.3; qcov=0.997; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0005876 (spindle microtubule); GO:0006468 (protein phosphorylation); GO:0007052 (mitotic spindle organization); GO:0031616 (spindle pole centrosome); GO:0032133 (chromosome passenger complex); GO:0032465 (regulation of cytokinesis); GO:0051233 (spindle midzone) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994922 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057776052.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057776052.1 |
| 3 | Cytoplasm | 细胞质 | 0.80000 | XP_057776052.1 |
| 4 | Midbody | Midbody | 0.60000 | XP_057776052.1 |
| 5 | Spindle | Spindle | 0.40000 | XP_057776052.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:55485807 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A13,A6 |
Chr7:55485955 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B134,B34,B64,C27 |
Chr7:55486181 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B105,B129,C10 |
Chr7:55486273 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B105,B107,B129,C10 |
Chr7:55486677 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | A9 |
Chr7:55486677 |
GC |
G |
1bp_deletion | CDS_variant | 1 | A9 |
Chr7:55487031 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:55487061 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C11,C40,C69,C70 |
Chr7:55487148 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B105,B107,B129,C10 |
Chr7:55487474 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A6,B88 |
Chr7:55487884 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B95 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057776052.1PF00069
Pkinase 31-281 aa
PF07714
PK_Tyr_Ser-Thr 32-277 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776052.1 |
Pfam | PF00069 |
Pkinase | Domain | 31 | 281 | 1.6e-74 | 251.3 | Protein kinase domain |
XP_057776052.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 32 | 277 | 8.7e-42 | 143.9 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。