Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004310`

染色体: Chr07 坐标: 55667805-55669246 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004310`
名称	SmilChr07G004310
描述	uncharacterized SmilChr07G004310
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	55667805 - 55669246 / `-`

ID 对照

NCBI Gene ID	`LOC130994936`
GeneID	`130994936`
locus_tag	`-`
NCBI Name	`LOC130994936`
原始查询	`SmilChr07G004310`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826869]; symbol=CPR1; hit=AT4G12560; species=arabidopsis; confidence=low
产物	F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826869]; symbol=CPR1; hit=AT4G12560; species=arabidopsis; confidence=low
Arabidopsis	`AT4G12560` (CPR1) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826869] identity=32.7; qcov=0.661; evalue=2.26e-09; confidence=low
Rice	`Os12g0164300` (OsFbox646) - identity=28.9; qcov=0.792; evalue=1.15e-07; confidence=low
GO	GO:0004842 (ubiquitin-protein transferase activity); GO:0005515 (protein binding); GO:0031146 (SCF-dependent proteasomal ubiquitin-dependent protein catabolic process)
KEGG	-
Pfam	PF00646 (F-box)
InterPro	-
eggNOG	-
NR	GeneID:130994936

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057776101.1`
2	Cytoplasm	细胞质	0.20000	`XP_057776101.1`
3	Cytosol	细胞质基质	0.20000	`XP_057776101.1`
4	Chromosome	染色体	0.00000	`XP_057776101.1`
5	Centromere	着丝粒	0.00000	`XP_057776101.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:55668199`	`TGC`	`T`	2bp_deletion	frameshift_variant	143	A1,A10,A2,A21,A22,A23,A24,A25,A5,A8,B10,B100,B101,B102,B103,B104,B107,B108,B109,B111,B113,B117,B118,B12,B122,B123,B124,B128,B130,B131,B134,B135,B136,B139,B140,B17,B19,B2,B20,B21,B26,B28,B29,B3,B30,B31,B34,B35,B36,B4,B40,B42,B43,B45,B47,B48,B49,B51,B54,B55,B56,B59,B60,B64,B66,B69,B7,B71,B73,B74,B75,B78,B79,B8,B81,B84,B85,B9,B91,B93,B95,B96,B97,B98,C1,C11,C13,C16,C17,C19,C21,C23,C24,C26,C29,C3,C31,C35,C37,C40,C41,C42,C43,C44,C47,C5,C50,C51,C52,C55,C56,C57,C58,C59,C6,C60,C61,C62,C64,C65,C66,C68,C69,C7,C71,C73,C76,C78,C80,C82,C83,C84,C85,C86,C87,C9,D1,D10,D2,D4,D5,D8,D9
`Chr7:55668221`	`GAA`	`G`	2bp_deletion	frameshift_variant	131	A1,A10,A2,A21,A22,A23,A24,A25,A5,A8,B10,B100,B101,B102,B103,B104,B107,B108,B111,B113,B117,B118,B12,B122,B123,B124,B128,B130,B134,B135,B136,B139,B140,B17,B19,B20,B21,B26,B28,B29,B3,B30,B31,B34,B35,B36,B4,B40,B42,B43,B45,B47,B48,B49,B51,B54,B55,B56,B59,B60,B64,B69,B7,B71,B73,B74,B75,B78,B79,B8,B81,B84,B85,B9,B91,B95,B96,B97,B98,C1,C11,C13,C16,C17,C19,C21,C23,C24,C26,C29,C3,C31,C35,C40,C41,C42,C43,C44,C5,C50,C51,C52,C56,C57,C59,C6,C60,C61,C62,C64,C65,C66,C68,C69,C7,C71,C73,C76,C78,C82,C83,C84,C85,C86,C87,C9,D1,D10,D5,D8,D9
`Chr7:55668225`	`T`	`TGG`	2bp_insertion	frameshift_variant	120	A1,A10,A2,A21,A22,A23,A24,A25,A5,A8,B10,B100,B101,B102,B103,B104,B107,B108,B111,B113,B117,B118,B12,B122,B123,B128,B130,B134,B135,B136,B139,B140,B17,B19,B20,B21,B26,B28,B29,B3,B30,B31,B34,B35,B36,B4,B40,B42,B43,B45,B49,B51,B54,B56,B59,B64,B69,B7,B73,B74,B75,B78,B79,B8,B81,B84,B85,B9,B91,B95,B96,B97,B98,C11,C13,C16,C17,C21,C23,C24,C26,C3,C31,C35,C40,C41,C42,C43,C44,C5,C50,C51,C52,C56,C57,C59,C6,C60,C61,C64,C65,C66,C68,C69,C7,C71,C73,C76,C78,C82,C83,C84,C85,C86,C87,C9,D10,D5,D8,D9
`Chr7:55668228`	`G`	`GT`	1bp_insertion	frameshift_variant	6	B2,B47,B55,B60,C58,C80
`Chr7:55668237`	`G`	`GGA`	2bp_insertion	frameshift_variant	8	B2,B47,B55,B60,B66,C1,C58,C80
`Chr7:55668241`	`A`	`ACC`	2bp_insertion	frameshift_variant	155	A1,A10,A11,A13,A14,A19,A2,A20,A21,A22,A23,A24,A25,A4,A5,A6,A8,A9,B10,B100,B101,B102,B104,B106,B107,B108,B111,B115,B117,B118,B120,B122,B123,B124,B125,B128,B129,B130,B134,B135,B136,B138,B139,B140,B17,B19,B2,B20,B21,B23,B25,B26,B28,B29,B3,B30,B31,B34,B35,B36,B37,B4,B40,B42,B43,B45,B47,B48,B49,B51,B52,B54,B55,B56,B59,B60,B63,B64,B69,B7,B71,B73,B74,B75,B76,B78,B79,B8,B81,B84,B85,B86,B9,B91,B95,B96,B97,B98,C1,C11,C16,C17,C18,C19,C2,C20,C21,C24,C25,C26,C28,C29,C3,C35,C40,C42,C43,C44,C45,C5,C50,C51,C52,C55,C56,C57,C59,C6,C60,C61,C62,C64,C65,C66,C68,C69,C7,C71,C73,C75,C76,C78,C79,C82,C83,C84,C85,C86,C87,C9,D1,D10,D5,D7,D8
`Chr7:55668277`	`G`	`A`	EMS_canonical_SNV	stop_gained	25	A18,A23,A6,A8,B108,B119,B127,B137,B20,B44,B61,B74,B81,B85,B87,B89,B91,C14,C27,C36,C37,C39,C72,D11,D5
`Chr7:55668280`	`CTT`	`C`	2bp_deletion	frameshift_variant	27	B113,B123,B18,B2,B22,B3,B32,B47,B55,B57,B60,B64,B66,B93,B99,C1,C15,C20,C3,C32,C33,C36,C41,C58,C73,C80,D11
`Chr7:55668365`	`C`	`CA`	1bp_insertion	frameshift_variant	73	A10,A11,A19,A22,A6,B10,B104,B107,B109,B118,B121,B122,B124,B130,B131,B135,B136,B21,B28,B29,B30,B31,B34,B35,B36,B4,B42,B43,B47,B49,B51,B54,B56,B59,B64,B69,B7,B74,B78,B8,B84,B85,B86,B88,B95,B96,B97,B98,C17,C23,C24,C31,C32,C35,C40,C43,C55,C56,C57,C60,C65,C68,C71,C73,C78,C83,C85,C86,C87,C9,D10,D2,D9
`Chr7:55668401`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B135
`Chr7:55668410`	`T`	`TA`	1bp_insertion	frameshift_variant	140	A1,A10,A11,A19,A2,A21,A22,A23,A24,A25,A5,A6,A7,A8,B10,B100,B101,B102,B103,B104,B107,B108,B109,B11,B111,B117,B118,B121,B122,B123,B124,B128,B130,B131,B134,B135,B136,B139,B140,B17,B19,B20,B21,B26,B28,B29,B3,B30,B31,B34,B35,B36,B4,B40,B42,B43,B45,B47,B48,B49,B5,B51,B54,B55,B56,B59,B60,B64,B69,B7,B73,B74,B75,B78,B79,B8,B81,B84,B85,B86,B88,B9,B91,B95,B96,B97,B98,C1,C11,C13,C17,C19,C21,C23,C24,C26,C29,C3,C31,C32,C35,C40,C42,C43,C44,C5,C50,C51,C52,C55,C56,C57,C59,C6,C60,C61,C62,C64,C65,C66,C68,C69,C7,C71,C73,C76,C78,C82,C83,C84,C86,C87,C9,D1,D10,D2,D4,D5,D8,D9
`Chr7:55668444`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776101.1

236 aa

118

236

F-box

PF00646 F-box 50-89 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776101.1`	Pfam	`PF00646`	F-box	Domain	50	89	8.7e-07	29.3	F-box domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057920118.1
TACTCCGCCTCCGCCGCCGCCGCGGCGTTGTACACAGTTTACAGAAAATAGAAAAGTTGAAATGCTTCGTCCGAAACTAGCCTCCCGCAAGCCGCCGCCTCCGTCGGTGCGCCGCTGCTGCACCGACGGCAGCGTTTCGGATCCTCATTCCCACATTCTTAGTAGAGAATCGATGATATGCATTAGAAAGGAGAGGCCAACAAACATAGAATCCCTCCACACAGAGCTATTGTTTGAAATCCTCCTCCGTTTGCCGGCCG...

CDS

1 records

下载 CDS FASTA

LOC130994936
ATGCTTCGTCCGAAACTAGCCTCCCGCAAGCCGCCGCCTCCGTCGGTGCGCCGCTGCTGCACCGACGGCAGCGTTTCGGATCCTCATTCCCACATTCTTAGTAGAGAATCGATGATATGCATTAGAAAGGAGAGGCCAACAAACATAGAATCCCTCCACACAGAGCTATTGTTTGAAATCCTCCTCCGTTTGCCGGCCGATCATCTCTACGAGAGAGCGAGGCTCGTGTGCCGGCGGTGGTGCCACATTATCCATTCTCA...

Protein

1 records

下载 Protein FASTA

XP_057776101.1
MLRPKLASRKPPPPSVRRCCTDGSVSDPHSHILSRESMICIRKERPTNIESLHTELLFEILLRLPADHLYERARLVCRRWCHIIHSHAFINAQMHGATYGLLLSPLNHNNTLPLYVTADADGGIHTSELNHISELGVLATCNGLELEGNFPRLVIVNPATKQSFHLPPLPTGFVACGLLLYGFAYSAASLAYKVIRPAFVRHYEPQAREDFHLDVLTVGFTTYPNFSGEVSSSRLP

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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