Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004312`

染色体: Chr07 坐标: 55686193-55687906 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004312`
名称	SmilChr07G004312
描述	uncharacterized SmilChr07G004312
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	55686193 - 55687906 / `-`

ID 对照

NCBI Gene ID	`LOC130994876`
GeneID	`130994876`
locus_tag	`-`
NCBI Name	`LOC130994876`
原始查询	`SmilChr07G004312`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826869]; symbol=CPR1; hit=AT4G12560; species=arabidopsis; confidence=low
产物	F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826869]; symbol=CPR1; hit=AT4G12560; species=arabidopsis; confidence=low
Arabidopsis	`AT4G12560` (CPR1) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826869] identity=29.7; qcov=0.472; evalue=2.06e-10; confidence=low
Rice	`Os01g0824700` (OsFbox048) - identity=30.4; qcov=0.303; evalue=5.97e-06; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF08268 (FBA_3); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:130994876

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057775976.1`
2	Cytoplasm	细胞质	0.20000	`XP_057775976.1`
3	Cytosol	细胞质基质	0.20000	`XP_057775976.1`
4	Chromosome	染色体	0.00000	`XP_057775976.1`
5	Centromere	着丝粒	0.00000	`XP_057775976.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:55686306`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B91,C68
`Chr7:55686314`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B91,C68
`Chr7:55686342`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B91,C68
`Chr7:55686434`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B91,C32,C68
`Chr7:55686503`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr7:55686514`	`T`	`TGC`	2bp_insertion	frameshift_variant	4	A3,B112,B88,C14
`Chr7:55686514`	`T`	`TGC`	2bp_insertion	CDS_variant	4	A3,B112,B88,C14
`Chr7:55686547`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr7:55686626`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,A3,B85,C34,C48
`Chr7:55686723`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A18,B127,C11
`Chr7:55686724`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B132,B38,B77
`Chr7:55686729`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B127,C11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775976.1

413 aa

206

413

F-box-like

F-box

FBA_3

PF12937 F-box-like 56-94 aa PF00646 F-box 56-96 aa PF08268 FBA_3 141-240 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775976.1`	Pfam	`PF12937`	F-box-like	Domain	56	94	5.1e-07	30.1	F-box-like
`XP_057775976.1`	Pfam	`PF00646`	F-box	Domain	56	96	1.1e-08	35.4	F-box domain
`XP_057775976.1`	Pfam	`PF08268`	FBA_3	Repeat	141	240	6e-08	32.8	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057919993.1
TATTTATTTGGATTTGGGCGGAAACCTGCTGCATTTATTTGGACCCACCGATCCACCGCTTGTAATTCATTTACTCCGCCGCCGCGTTCTACACAATTCACCGGAAAATCGAAAAGTTGAAATGCTTCGTCCGAAACTAACCCCCAGCAAGCCGCCACCTCCACGGCATTGCTGCACCGACGGCAGCGTTTCGGATCCCCATTGGGACATTCTTAGTAGAGAATCGATGAAAATTAGAAGTCGGGCTTATTATTCCCGGA...

CDS

1 records

下载 CDS FASTA

LOC130994876
ATGCTTCGTCCGAAACTAACCCCCAGCAAGCCGCCACCTCCACGGCATTGCTGCACCGACGGCAGCGTTTCGGATCCCCATTGGGACATTCTTAGTAGAGAATCGATGAAAATTAGAAGTCGGGCTTATTATTCCCGGAGGTGTAAAAAGGGGATGCCAACAAATATAGAGTCCCTCCCCACAGACCTATTGTTCGAAATCCTCCTCCGATTGCCGGCCGATCATCTCTACGAGAGAGCGAGGCTCGTGTGCTGGCGGTG...

Protein

1 records

下载 Protein FASTA

XP_057775976.1
MLRPKLTPSKPPPPRHCCTDGSVSDPHWDILSRESMKIRSRAYYSRRCKKGMPTNIESLPTDLLFEILLRLPADHLYERARLVCWRWYHIIHSHAFINAQMHGATYGLLLAPLDDNTLPLYVTADADGEIHTSELNGISEDVLATCNGLELEGSFPRLVIVNPATKQSFHLPPFPTGVTYALLKYGFAYSAASLAYKVIRQVSGRHYEPHAQEDYGLDVLTVGVDESWRQVEVHHLPNHVRRRLLAKTPLTSEGFLHWGW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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