当前解析结果
SmilChr07G004323| 统一新 Gene ID | SmilChr07G004323 |
|---|---|
| 名称 | SmilChr07G004323 |
| 描述 | homeobox protein ATH1-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 55771957 - 55776445 / - |
| NCBI Gene ID | LOC130994863 |
|---|---|
| GeneID | 130994863 |
| locus_tag | - |
| NCBI Name | LOC130994863 |
| 原始查询 | SmilChr07G004323 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | homeobox protein ATH1-like |
| 产物 | homeobox protein ATH1-like |
| Arabidopsis | AT4G32980 (ATH1)homeobox protein ATH1 [Source:NCBI gene (formerly Entrezgene);Acc:829435] identity=52.8; qcov=0.635; evalue=1.45e-100; confidence=high |
| Rice | Os02g0226600- identity=51.8; qcov=0.385; evalue=3.07e-61; confidence=low |
| GO | GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0006357 (regulation of transcription by RNA polymerase II) |
| KEGG | - |
| Pfam | PF00046 (Homeodomain); PF05920 (Homeobox_KN); PF07526 (POX) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994863 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057775954.1 |
| 2 | Nucleoplasm | 核质 | 0.20000 | XP_057775954.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057775954.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057775954.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057775954.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:55772265 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr7:55773002 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A13 |
Chr7:55773111 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D11,D9 |
Chr7:55773171 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C80,D11,D9 |
Chr7:55773196 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B11,B17,B5,B65,C29 |
Chr7:55773286 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr7:55773302 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr7:55773345 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr7:55773463 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B1,B75,C8 |
Chr7:55773475 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A19,B33,B79,C51 |
Chr7:55773514 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A19,B79,C51 |
Chr7:55773589 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B33,B65,C23,C61 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775954.1PF07526
POX 238-359 aa
PF05920
Homeobox_KN 419-458 aa
PF00046
Homeodomain 421-458 aa
XP_057775956.1PF07526
POX 238-359 aa
PF05920
Homeobox_KN 419-458 aa
PF00046
Homeodomain 421-458 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775954.1 |
Pfam | PF07526 |
POX | Domain | 238 | 359 | 2.7e-23 | 83.7 | Associated with HOX |
XP_057775954.1 |
Pfam | PF05920 |
Homeobox_KN | Family | 419 | 458 | 2.2e-16 | 60.1 | Homeobox KN domain |
XP_057775954.1 |
Pfam | PF00046 |
Homeodomain | Domain | 421 | 458 | 2.2e-05 | 24.9 | Homeodomain |
XP_057775956.1 |
Pfam | PF07526 |
POX | Domain | 238 | 359 | 2.7e-23 | 83.7 | Associated with HOX |
XP_057775956.1 |
Pfam | PF05920 |
Homeobox_KN | Family | 419 | 458 | 2.2e-16 | 60.1 | Homeobox KN domain |
XP_057775956.1 |
Pfam | PF00046 |
Homeodomain | Domain | 421 | 458 | 2.2e-05 | 24.9 | Homeodomain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。