当前解析结果
SmilChr07G004332| 统一新 Gene ID | SmilChr07G004332 |
|---|---|
| 名称 | SmilChr07G004332 |
| 描述 | beta-fructofuranosidase, insoluble isoenzyme CWINV3-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 55888268 - 55890061 / - |
| NCBI Gene ID | LOC130994952 |
|---|---|
| GeneID | 130994952 |
| locus_tag | - |
| NCBI Name | LOC130994952 |
| 原始查询 | SmilChr07G004332 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | beta-fructofuranosidase, insoluble isoenzyme CWINV3-like |
| 产物 | beta-fructofuranosidase%2C insoluble isoenzyme CWINV3-like |
| Arabidopsis | AT3G13790 (ATBFRUCT1)Glycosyl hydrolases family 32 protein [Source:NCBI gene (formerly Entrezgene);Acc:820591] identity=62.4; qcov=0.477; evalue=7.14e-34; confidence=medium |
| Rice | Os01g0966700 (OsCIN4)- identity=60.2; qcov=0.477; evalue=1.25e-34; confidence=medium |
| GO | GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005975 (carbohydrate metabolic process) |
| KEGG | - |
| Pfam | PF00251 (Glyco_hydro_32N); PF08244 (Glyco_hydro_32C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994952 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 1.00000 | XP_057776146.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057776146.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057776146.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057776146.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057776146.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:55888409 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C30 |
Chr7:55888414 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A10,A21,B25,B48,B60 |
Chr7:55888417 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr7:55888444 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C30 |
Chr7:55888463 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B109,B114 |
Chr7:55888527 |
C |
CTA |
2bp_insertion | frameshift_variant | 4 | A21,B120,B16,B25 |
Chr7:55888527 |
C |
CTA |
2bp_insertion | CDS_variant | 4 | A21,B120,B16,B25 |
Chr7:55888540 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C26 |
Chr7:55889243 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B82,C64 |
Chr7:55889268 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A5,B123,B18,C76,D2 |
Chr7:55889636 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B117,B24,B52,B64 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057776146.1PF00251
Glyco_hydro_32N 1-102 aa
PF08244
Glyco_hydro_32C 113-177 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776146.1 |
Pfam | PF00251 |
Glyco_hydro_32N | Repeat | 1 | 102 | 7e-33 | 115.2 | Glycosyl hydrolases family 32 N-terminal domain |
XP_057776146.1 |
Pfam | PF08244 |
Glyco_hydro_32C | Domain | 113 | 177 | 1.3e-14 | 55.3 | Glycosyl hydrolases family 32 C terminal |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。