当前解析结果
SmilChr07G004338| 统一新 Gene ID | SmilChr07G004338 |
|---|---|
| 名称 | SmilChr07G004338 |
| 描述 | serine/threonine-protein kinase EDR1-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 55938809 - 55944954 / + |
| NCBI Gene ID | LOC130994815 |
|---|---|
| GeneID | 130994815 |
| locus_tag | - |
| NCBI Name | LOC130994815 |
| 原始查询 | SmilChr07G004338 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine/threonine-protein kinase EDR1-like |
| 产物 | serine/threonine-protein kinase EDR1-like |
| Arabidopsis | AT5G11850 (AT5G11850)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831058] identity=48.9; qcov=1.1; evalue=0; confidence=high |
| Rice | Os02g0220700- identity=46.6; qcov=0.839; evalue=1.92e-179; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF14381 (EDR1_CTR1_ARMC3_pept) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994815 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057775868.1 |
| 2 | Cell membrane | 细胞膜 | 0.80000 | XP_057775868.1 |
| 3 | Cytoplasm | 细胞质 | 0.60000 | XP_057775868.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057775868.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057775868.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:55939060 |
A |
AT |
1bp_insertion | frameshift_variant | 3 | A14,C13,C37 |
Chr7:55939060 |
A |
AT |
1bp_insertion | CDS_variant | 3 | A14,C13,C37 |
Chr7:55939069 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B101,B104,B24,C64 |
Chr7:55939084 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C13,C37 |
Chr7:55939121 |
TC |
T |
1bp_deletion | frameshift_variant | 12 | A14,A2,B101,B114,B24,B33,B9,C13,C3,C37,C64,C66 |
Chr7:55939124 |
C |
CTT |
2bp_insertion | frameshift_variant | 6 | A3,B107,B12,B135,B91,C72 |
Chr7:55939185 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C13,C37 |
Chr7:55939189 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B101,B24,B9,C3,C64 |
Chr7:55939220 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr7:55939237 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,B104 |
Chr7:55939321 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:55939376 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775868.1PF14381
EDR1_CTR1_ARMC3_pept 113-317 aa
PF07714
PK_Tyr_Ser-Thr 551-803 aa
PF00069
Pkinase 552-800 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775868.1 |
Pfam | PF14381 |
EDR1_CTR1_ARMC3_pept | Domain | 113 | 317 | 5.3e-71 | 239.4 | EDR1/CTR1/ARMC3, peptidase-like |
XP_057775868.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 551 | 803 | 9.6e-66 | 222.4 | Protein tyrosine and serine/threonine kinase |
XP_057775868.1 |
Pfam | PF00069 |
Pkinase | Domain | 552 | 800 | 9.7e-54 | 183.2 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。