当前解析结果
SmilChr07G004341| 统一新 Gene ID | SmilChr07G004341 |
|---|---|
| 名称 | SmilChr07G004341 |
| 描述 | ankyrin repeat-containing protein At2g01680-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 55958932 - 55962513 / + |
| NCBI Gene ID | LOC130994893 |
|---|---|
| GeneID | 130994893 |
| locus_tag | - |
| NCBI Name | LOC130994893 |
| 原始查询 | SmilChr07G004341 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ankyrin repeat-containing protein At2g01680-like |
| 产物 | ankyrin repeat-containing protein At2g01680-like |
| Arabidopsis | AT5G51160 (AT5G51160)Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:835190] identity=27.5; qcov=0.878; evalue=1.54e-29; confidence=low |
| Rice | Os11g0434400- identity=23.8; qcov=0.936; evalue=1.37e-19; confidence=weak |
| GO | GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13962 (PGG) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994893 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057775997.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057775997.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057775997.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057775997.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057775997.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:55959115 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C70 |
Chr7:55959211 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A3,B126,B135,B66 |
Chr7:55959232 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A19,B24 |
Chr7:55959257 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A19,B24 |
Chr7:55959369 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
Chr7:55961765 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A16,B18,B47 |
Chr7:55961844 |
CCT |
C |
2bp_deletion | frameshift_variant | 1 | B131 |
Chr7:55961844 |
CCT |
C |
2bp_deletion | CDS_variant | 1 | B131 |
Chr7:55961855 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr7:55961927 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B134 |
Chr7:55961930 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B22,C64,C66,C79,C82 |
Chr7:55961945 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775997.1PF12796
Ank_2 10-98 aa
PF13637
Ank_4 46-96 aa
PF12796
Ank_2 108-174 aa
PF13637
Ank_4 114-164 aa
PF13606
Ank_3 144-167 aa
PF00023
Ank 144-174 aa
PF13962
PGG 212-324 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775997.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 10 | 98 | 3.1e-25 | 89.3 | Ankyrin repeats (3 copies) |
XP_057775997.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 46 | 96 | 6.5e-15 | 55.6 | Ankyrin repeats (many copies) |
XP_057775997.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 108 | 174 | 3.1e-25 | 89.3 | Ankyrin repeats (3 copies) |
XP_057775997.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 114 | 164 | 6.5e-15 | 55.6 | Ankyrin repeats (many copies) |
XP_057775997.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 144 | 167 | 8e-16 | 57.1 | Ankyrin repeat |
XP_057775997.1 |
Pfam | PF00023 |
Ank | Repeat | 144 | 174 | 3.6e-17 | 62.2 | Ankyrin repeat |
XP_057775997.1 |
Pfam | PF13962 |
PGG | Domain | 212 | 324 | 7.2e-27 | 94.2 | Domain of unknown function |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。