Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G004346

染色体: Chr07 坐标: 56004551-56008125 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G004346
名称SmilChr07G004346
描述calcineurin B-like protein 10
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向56004551 - 56008125 / +

ID 对照

NCBI Gene IDLOC130994931
GeneID130994931
locus_tag-
NCBI NameLOC130994931
原始查询SmilChr07G004346

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述calcineurin B-like protein 10
产物calcineurin B-like protein 10
ArabidopsisAT4G33000 (CBL10)
calcineurin B-like protein 10 [Source:NCBI gene (formerly Entrezgene);Acc:829437]
identity=66; qcov=0.961; evalue=5.84e-113; confidence=high
RiceOs01g0711500 (OsCBL10)
-
identity=56.6; qcov=0.988; evalue=1.7e-99; confidence=high
GOGO:0005509 (calcium ion binding); GO:0019722 (calcium-mediated signaling); GO:0019900 (kinase binding)
KEGG-
PfamPF13202 (EF-hand_5); PF13499 (EF-hand_7)
InterPro-
eggNOG-
NRGeneID:130994931

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Vacuole membrane 液泡膜 0.60000 XP_057776086.1
2 Vacuole 液泡 0.40000 XP_057776086.1
3 Cytoplasm 细胞质 0.20000 XP_057776086.1
4 Endoplasmic reticulum 内质网 0.20000 XP_057776086.1
5 Nucleus 细胞核 0.00000 XP_057776086.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:56005283 G A EMS_canonical_SNV CDS_variant 1 D10
Chr7:56007466 C T EMS_canonical_SNV CDS_variant 1 D6
Chr7:56007816 G A EMS_canonical_SNV CDS_variant 1 B75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057776086.1
256 aa
N
1
128
256
EF-hand_5
EF-hand_7
EF-hand_5
C
PF13202 EF-hand_5 119-138 aa PF13499 EF-hand_7 152-220 aa PF13202 EF-hand_5 199-223 aa
XP_057776087.1
255 aa
N
1
128
255
EF-hand_5
EF-hand_7
EF-hand_5
C
PF13202 EF-hand_5 118-137 aa PF13499 EF-hand_7 151-219 aa PF13202 EF-hand_5 198-222 aa
XP_057776088.1
254 aa
N
1
127
254
EF-hand_5
EF-hand_7
EF-hand_5
C
PF13202 EF-hand_5 117-136 aa PF13499 EF-hand_7 150-218 aa PF13202 EF-hand_5 197-221 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057776086.1 Pfam PF13202 EF-hand_5 Domain 119 138 1.4e-11 44.0 EF hand
XP_057776086.1 Pfam PF13499 EF-hand_7 Domain 152 220 1.2e-16 61.5 EF-hand domain pair
XP_057776086.1 Pfam PF13202 EF-hand_5 Domain 199 223 1.4e-11 44.0 EF hand
XP_057776087.1 Pfam PF13202 EF-hand_5 Domain 118 137 1.4e-11 44.0 EF hand
XP_057776087.1 Pfam PF13499 EF-hand_7 Domain 151 219 1.4e-16 61.3 EF-hand domain pair
XP_057776087.1 Pfam PF13202 EF-hand_5 Domain 198 222 1.4e-11 44.0 EF hand
XP_057776088.1 Pfam PF13202 EF-hand_5 Domain 117 136 1.4e-11 44.0 EF hand
XP_057776088.1 Pfam PF13499 EF-hand_7 Domain 150 218 2.4e-16 60.6 EF-hand domain pair
XP_057776088.1 Pfam PF13202 EF-hand_5 Domain 197 221 1.4e-11 44.0 EF hand

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057920105.1
GGGAGGGAAGCTTGGATATTCTTCATCTTCAAATAATAATAATAAAAAATTATATATCCATACATAAATGAAAGTGATAAGGCTTGAGTGAAACATTAATGGATTTAACAAGAAAATAAACCACCTGCCAAAAAGGGGAAAATATACGAAATAATCATCTGTGCATAGATGAGCATGGTCCTACCAGATTTTCTGAAATGGATTCGAGCAACAATTTGCTGCTGGAGTCTAGCTCTCTGACATTTGCGGAGAAGCTGTGC...
XM_057920103.1
ATAAATGAAAGTGATAAGGCTTGAGTGAAACATTAATGGATTTAACAAGAAAATAAACCACCTGCCAAAAAGGGGAAAATATACGAAATAATCATCTGTGCATAGATGAGCATGGTCCTACCAGATTTTCTGAAATGGATTCGAGCAACAATTTGCTGCTGGAGTCTAGCTCTCTGACATTTGCGGAGAAGCTGTGCGCAGCGGTGTTCCCGATTCTAGCGTTAATCGACGCGTTGATCTTCGCGGTTTCCAGTTGTTTC...

CDS

3 records

下载 CDS FASTA
LOC130994931
ATGGATTCGAGCAACAATTTGCTGCTGGAGTCTAGCTCTCTGACATTTGCGGAGAAGCTGTGCGCAGCGGTGTTCCCGATTCTAGCGTTAATCGACGCGTTGATCTTCGCGGTTTCCAGTTGTTTCGATTTCAAGTGCAGAAAATCGAGCAATACGAAGAAATTGAGCTACGACTACGAGGATATTGTTCGTCTCTCTCGGGGATCTCATTGTAATATTACTGTAAATGAAGTGGAGGCATTGCATGAGTTGTTTAAGAA...
LOC130994931
ATGGATTCGAGCAACAATTTGCTGCTGGAGTCTAGCTCTCTGACATTTGCGGAGAAGCTGTGCGCAGCGGTGTTCCCGATTCTAGCGTTAATCGACGCGTTGATCTTCGCGGTTTCCAGTTGTTTCGATTTCAAGTGCAGAAAATCGAGCAATACGAAGAAATTGAGCTACGACTACGAGGATATTGTTCGTCTCTCTCGGGGATCTCATTGTATTACTGTAAATGAAGTGGAGGCATTGCATGAGTTGTTTAAGAAGCT...

Protein

3 records

下载 Protein FASTA
XP_057776086.1
MDSSNNLLLESSSLTFAEKLCAAVFPILALIDALIFAVSSCFDFKCRKSSNTKKLSYDYEDIVRLSRGSHCNITVNEVEALHELFKKLSSSIIDDGLIHKEELKLALFTTASGENLILDRVFDLFDLKRNGVIDLEEFVCSLNVFHPNASLEEKIEFAFKLYDLGQTGFIEREEVKQLVIAILAESHMKLSDELLELIIDKTFEDADADKDGKINEEDWKTFVMQHPLLLRNMTLPHLKDVTTVFPSFVFNTEVED
XP_057776087.1
MDSSNNLLLESSSLTFAEKLCAAVFPILALIDALIFAVSSCFDFKCRKSSNTKKLSYDYEDIVRLSRGSHCITVNEVEALHELFKKLSSSIIDDGLIHKEELKLALFTTASGENLILDRVFDLFDLKRNGVIDLEEFVCSLNVFHPNASLEEKIEFAFKLYDLGQTGFIEREEVKQLVIAILAESHMKLSDELLELIIDKTFEDADADKDGKINEEDWKTFVMQHPLLLRNMTLPHLKDVTTVFPSFVFNTEVED

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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