Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004349`

染色体: Chr07 坐标: 56022695-56025168 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004349`
名称	SmilChr07G004349
描述	uncharacterized protein ycf36-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	56022695 - 56025168 / `-`

ID 对照

NCBI Gene ID	`LOC130994933`
GeneID	`130994933`
locus_tag	`-`
NCBI Name	`LOC130994933`
原始查询	`SmilChr07G004349`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	YCF36, putative (DUF1230) [Source:NCBI gene (formerly Entrezgene);Acc:831057]; symbol=AT5G11840; hit=AT5G11840; species=arabidopsis; confidence=high
产物	YCF36, putative (DUF1230) [Source:NCBI gene (formerly Entrezgene);Acc:831057]; symbol=AT5G11840; hit=AT5G11840; species=arabidopsis; confidence=high
Arabidopsis	`AT5G11840` (AT5G11840) YCF36, putative (DUF1230) [Source:NCBI gene (formerly Entrezgene);Acc:831057] identity=61.3; qcov=0.864; evalue=1.63e-79; confidence=high
Rice	`Os05g0539900` - identity=61.7; qcov=0.508; evalue=6.97e-46; confidence=medium
GO	-
KEGG	-
Pfam	PF06799 (CGLD27-like)
InterPro	-
eggNOG	-
NR	GeneID:130994933

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057776092.1`
2	Chloroplast thylakoid	类囊体	1.00000	`XP_057776092.1`
3	Chloroplast membrane	叶绿体膜	0.80000	`XP_057776092.1`
4	Chloroplast thylakoid membrane	类囊体膜	0.40000	`XP_057776092.1`
5	Nucleus	细胞核	0.00000	`XP_057776092.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:56022955`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B122,B131
`Chr7:56022970`	`TA`	`T`	1bp_deletion	frameshift_variant	1	D11
`Chr7:56022970`	`TA`	`T`	1bp_deletion	CDS_variant	1	D11
`Chr7:56023018`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:56023023`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B128,B92
`Chr7:56023044`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B133,B57
`Chr7:56023086`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B22,B67,B86,C20
`Chr7:56023087`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A6,B54,C17,C60
`Chr7:56023088`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B1,B117,B75,C8,D11
`Chr7:56023098`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B22,B67,B86,C20
`Chr7:56023158`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr7:56023172`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A3,B135,B66

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776092.1

251 aa

126

251

CGLD27-like

PF06799 CGLD27-like 49-192 aa

XP_057776093.1

236 aa

118

236

CGLD27-like

PF06799 CGLD27-like 49-180 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776092.1`	Pfam	`PF06799`	CGLD27-like	Family	49	192	1.1e-54	185.1	Conserved in the green lineage and diatoms 27
`XP_057776093.1`	Pfam	`PF06799`	CGLD27-like	Family	49	180	9.1e-49	165.9	Conserved in the green lineage and diatoms 27

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920109.1
TTTGAAAAGTTTTGAACACTCCAAAATATATTTGTCACCTTGTTTTTCATTCTCCCTCTTCTTTTCTTGTTCACCACATCATATTTCTTTCCATACGCAACAAAAAACTTCTCTCCCAACCTCAACTAATCAAATTATCCAAAACCAAACCCAATAAAAAAAAATCCCAAATAAATAAATAAACAAAAAACTTGCATATAGAGAGAGAATGGCCACCACCTCCTTTCTCTCTCTAAAACCACTCTCCTCACCGCCTCTCA...

XM_057920110.1
AAAAGTTTTGAACACTCCAAAATATATTTGTCACCTTGTTTTTCATTCTCCCTCTTCTTTTCTTGTTCACCACATCATATTTCTTTCCATACGCAACAAAAAACTTCTCTCCCAACCTCAACTAATCAAATTATCCAAAACCAAACCCAATAAAAAAAAATCCCAAATAAATAAATAAACAAAAAACTTGCATATAGAGAGAGAATGGCCACCACCTCCTTTCTCTCTCTAAAACCACTCTCCTCACCGCCTCTCACCTT...

CDS

2 records

下载 CDS FASTA

LOC130994933
ATGGCCACCACCTCCTTTCTCTCTCTAAAACCACTCTCCTCACCGCCTCTCACCTTCCCCTCCACCCACCACCACCACCACCACCTCATCAAATTCCCCAAAATACCCCTCTCATCTTTCAATTATGACAACAACACCCCAGAGTGCCCGGTCCCACCGGAGCAGCAGCCAATCAACGAGTTCCACTCTCTCTCCAACTCCTTCCCTTTCTCGTGGGCGTCAAGCGACGTCGTCGAGTACTCCTCCCGGCTGCTGGCGGT...

Protein

2 records

下载 Protein FASTA

XP_057776092.1
MATTSFLSLKPLSSPPLTFPSTHHHHHHLIKFPKIPLSSFNYDNNTPECPVPPEQQPINEFHSLSNSFPFSWASSDVVEYSSRLLAVGACFAVFVGLPISWFGSIGPKSEPVKLIMGCVASGLFVVIVAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLGRLKNTLIFLGISLLMCIVPFVNSDGQKRGVIPPAEPGGRAVPGVYNDESARNFEPEAFCGGEAVDP

XP_057776093.1
MATTSFLSLKPLSSPPLTFPSTHHHHHHLIKFPKIPLSSFNYDNNTPECPVPPEQQPINEFHSLSNSFPFSWASSDVVEYSSRLLAVGACFAVFVGLPISWFGSIGPKSEPVKLIMGCVASGLFVVIVAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSFPLLIRTAKNAVSFRQRSREDEPFPGFTTMSPPETSSPRHSVAAKLWTLRFIFLDKF

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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