Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004351`

染色体: Chr07 坐标: 56057953-56064015 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004351`
名称	SmilChr07G004351
描述	glycine dehydrogenase (decarboxylating), mitochondrial-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	56057953 - 56064015 / `-`

ID 对照

NCBI Gene ID	`LOC130994794`
GeneID	`130994794`
locus_tag	`-`
NCBI Name	`LOC130994794`
原始查询	`SmilChr07G004351`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glycine dehydrogenase (decarboxylating), mitochondrial-like
产物	glycine dehydrogenase (decarboxylating)%2C mitochondrial-like
Arabidopsis	`AT2G26080` (GLDP2) glycine decarboxylase P-protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:817149] identity=85.1; qcov=1.01; evalue=0; confidence=high
Rice	`Os06g0611900` - identity=90; qcov=0.478; evalue=0; confidence=medium
GO	GO:0004375 (glycine dehydrogenase (decarboxylating) activity); GO:0005739 (mitochondrion); GO:0005960 (glycine cleavage complex); GO:0009941 (chloroplast envelope); GO:0016594 (glycine binding); GO:0019464 (glycine decarboxylation via glycine cleavage system); GO:0030170 (pyridoxal phosphate binding); GO:0048046 (apoplast)
KEGG	smil00260 (Glycine, serine and threonine metabolism - Salvia miltiorrhiza (redroot sage)); smil00630 (Glyoxylate and dicarboxylate metabolism - Salvia miltiorrhiza (redroot sage)); smil00670 (One carbon pool by folate - Salvia miltiorrhiza (redroot sage)); smil00785 (Lipoic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF02347 (GDC-P); PF21478 (GcvP2_C)
InterPro	-
eggNOG	-
NR	GeneID:130994794

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057775836.1`
2	Mitochondrion matrix	线粒体基质	0.40000	`XP_057775836.1`
3	Nucleus	细胞核	0.00000	`XP_057775836.1`
4	Chromosome	染色体	0.00000	`XP_057775836.1`
5	Centromere	着丝粒	0.00000	`XP_057775836.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:56058810`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B134
`Chr7:56058820`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr7:56059102`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B122,B131
`Chr7:56059239`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C1
`Chr7:56059239`	`GC`	`G`	1bp_deletion	CDS_variant	1	C1
`Chr7:56059267`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B46,B98,C48,C53,C85
`Chr7:56059464`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B52,B77,C13,C49,C86
`Chr7:56059473`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B134
`Chr7:56059737`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	C18,C19,C25,C35,C76
`Chr7:56059791`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B123,B8,C73
`Chr7:56059903`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B134
`Chr7:56059960`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B52,C55

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775836.1

1041 aa

520

1041

GDC-P

GcvP2_C

PF02347 GDC-P 84-510 aa PF02347 GDC-P 521-803 aa PF21478 GcvP2_C 854-975 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775836.1`	Pfam	`PF02347`	GDC-P	Domain	84	510	1.2e-200	667.6	Glycine cleavage system P-protein
`XP_057775836.1`	Pfam	`PF02347`	GDC-P	Domain	521	803	1.2e-200	667.6	Glycine cleavage system P-protein
`XP_057775836.1`	Pfam	`PF21478`	GcvP2_C	Domain	854	975	6.5e-60	201.1	Glycine dehydrogenase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057919853.1
CCATTTCCATTTCCCACCACCCACTTCTTGTAACAGTAAAAAATGAAATCTTTTTAGTGAGCGAAGCTGAAGCTCAGAGCTTTACACACAGGCAAAACCGAAACCACTCCGTTTTGCTTGAATTCAATCCCATTCTCTCTCTCTCTCTCTCTCTAGAAATGGAGCGCGCGAGGAAGCTAGCGAACCGTGCCATCCTCCGCCGCCTCGTCTCCGAATCGAAGCAGCAGCCATTGCACAACCAATCCTCGCGCTACGCCTCC...

CDS

1 records

下载 CDS FASTA

LOC130994794
ATGGAGCGCGCGAGGAAGCTAGCGAACCGTGCCATCCTCCGCCGCCTCGTCTCCGAATCGAAGCAGCAGCCATTGCACAACCAATCCTCGCGCTACGCCTCCTCCCTCTCCCCCAGCGTCGTGCAGGGCCGGAGCGCCGCCAATGCCTCCGCCGCCAACCACCGCTTCTACTCTCGAAACCTCGCCCAATTCGTCGGCACCCGCTCCATCTCCGTCGACGCCCTCAAGCCCAGCGACACCTTCCCGCGCCGCCACAACTC...

Protein

1 records

下载 Protein FASTA

XP_057775836.1
MERARKLANRAILRRLVSESKQQPLHNQSSRYASSLSPSVVQGRSAANASAANHRFYSRNLAQFVGTRSISVDALKPSDTFPRRHNSATPEDQSKMAEFVGFETLDSLIDATVPKSIRAGDMKFSIFDEGLTEAQMVEHMKDLASKNKVFKSFIGMGYYNTFVPPVILRNIMENPAWYTQYTPYQAEISQGRLESLLNYQTMVTDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKTFVIASNCHPQTIDVCKTRAD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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