Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004365`

染色体: Chr07 坐标: 56190578-56194392 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004365`
名称	SmilChr07G004365
描述	alpha-soluble NSF attachment protein-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	56190578 - 56194392 / `+`

ID 对照

NCBI Gene ID	`LOC130994970`
GeneID	`130994970`
locus_tag	`-`
NCBI Name	`LOC130994970`
原始查询	`SmilChr07G004365`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha-soluble NSF attachment protein-like
产物	alpha-soluble NSF attachment protein-like
Arabidopsis	`AT3G56190` (ALPHA-SNAP2) alpha-soluble NSF attachment protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:824785] identity=66; qcov=0.541; evalue=3.35e-12; confidence=low
Rice	`Os08g0282400` - identity=58.5; qcov=0.541; evalue=2.96e-15; confidence=low
GO	GO:0005483 (soluble NSF attachment protein activity); GO:0005774 (vacuolar membrane); GO:0006886 (intracellular protein transport); GO:0019905 (syntaxin binding); GO:0031201 (SNARE complex); GO:0035494 (SNARE complex disassembly)
KEGG	-
Pfam	PF14938 (SNAP)
InterPro	-
eggNOG	-
NR	GeneID:130994970

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057776170.1`
2	Nucleus	细胞核	0.40000	`XP_057776171.1`
3	Mitochondrion	线粒体	0.40000	`XP_057776171.1`
4	Cytosol	细胞质基质	0.20000	`XP_057776170.1`
5	Chromosome	染色体	0.00000	`XP_057776170.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:56191287`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B104
`Chr7:56191287`	`GA`	`G`	1bp_deletion	CDS_variant	1	B104
`Chr7:56191324`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B17,B37,B66
`Chr7:56192102`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr7:56192105`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B69,B9,C5
`Chr7:56192127`	`C`	`CT`	1bp_insertion	frameshift_variant	240	A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B106,B107,B108,B109,B11,B111,B113,B114,B115,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B24,B25,B26,B27,B3,B30,B31,B32,B33,B34,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B52,B53,B54,B56,B57,B58,B6,B60,B61,B62,B63,B64,B65,B66,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B86,B87,B88,B9,B90,B91,B92,B93,B95,B96,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C25,C26,C27,C28,C29,C3,C30,C32,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr7:56192151`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A19,B37
`Chr7:56193500`	`CAA`	`C`	2bp_deletion	frameshift_variant	15	B101,B104,B109,B110,B119,B124,B129,B139,B47,B55,B84,B86,C16,C55,C85
`Chr7:56193510`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B17,B37
`Chr7:56193511`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,B39,B6,C2,C48
`Chr7:56193549`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B50,C46,C61,C8
`Chr7:56193576`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B119,B22,B48,C44,C7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776170.1

99 aa

SNAP

PF14938 SNAP 37-99 aa

XP_057776171.1

98 aa

SNAP

PF14938 SNAP 37-93 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776170.1`	Pfam	`PF14938`	SNAP	Repeat	37	99	2.1e-20	74.1	Soluble NSF attachment protein, SNAP
`XP_057776171.1`	Pfam	`PF14938`	SNAP	Repeat	37	93	1.1e-15	58.6	Soluble NSF attachment protein, SNAP

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920188.1
CCCCAAATCGGACCTGGCTCTCTCTATCTTCTCCATCACGCTCACCGCCGCAATCCTCTCTCTGTCCGTCTTCCCACCGGCTCCGGCGAGGCCGTATCCGGCCGAGGGCGCCGCTCCTCGACTACTACCTCCCATCATCCATTTTTCTCTCTCAAAAATCACGGATGAAGACTAAAGGGGAGCCCTAATTTCCTCCCCAAATCAGGAATCGCCGCCGCCTGAGCCGAAATCCGGCAACGCAGCGCCCTTCTCTTCGGCGT...

XM_057920187.1
CCCCAAATCGGACCTGGCTCTCTCTATCTTCTCCATCACGCTCACCGCCGCAATCCTCTCTCTGTCCGTCTTCCCACCGGCTCCGGCGAGGCCGTATCCGGCCGAGGGCGCCGCTCCTCGACTACTACCTCCCATCATCCATTTTTCTCTCTCAAAAATCACGGATGAAGACTAAAGGGGAGCCCTAATTTCCTCCCCAAATCAGGAATCGCCGCCGCCTGAGCCGAAATCCGGCAACGCAGCGCCCTTCTCTTCGGCGT...

CDS

2 records

下载 CDS FASTA

LOC130994970
ATGGCGGTGAGACTGGAGGAAGAAAATGATATCATGTTGAAAGAGAAGATGCTTGCTTCCTTACAAAATGAAAACAAGATCTTTTTGTGTCAGGGTCCTTTCAACAATGAGCAGGAGTTAGATAGCAAGCATGAAGCTGCTAATGCGTATGCTGATGCAGCTCATTGCTACAAAAAGTGCAATATACAAGAGTCAATTTCATGCCTGGAGGAATCTGTAAATATCTTTCTGGATATTGGAAGGTTTAATATGTCTGCAAG...

Protein

2 records

下载 Protein FASTA

XP_057776170.1
MAVRLEEENDIMLKEKMLASLQNENKIFLCQGPFNNEQELDSKHEAANAYADAAHCYKKCNIQESISCLEESVNIFLDIGRFNMSARYYKEIAELYEQE

XP_057776171.1
MAVRLEEENDIMLKEKMLASLQNENKIFLCQGPFNNEQELDSKHEAANAYADAAHCYKKCNIQESISCLEESVNIFLDIGRFNMSARYYKVLGRSRWR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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