Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004378`

染色体: Chr07 坐标: 56316985-56320063 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004378`
名称	SmilChr07G004378
描述	probable ADP,ATP carrier protein At5g56450
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	56316985 - 56320063 / `+`

ID 对照

NCBI Gene ID	`LOC130994918`
GeneID	`130994918`
locus_tag	`-`
NCBI Name	`LOC130994918`
原始查询	`SmilChr07G004378`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable ADP,ATP carrier protein At5g56450
产物	probable ADP%2CATP carrier protein At5g56450
Arabidopsis	`AT5G56450` (PM-ANT) Mitochondrial substrate carrier family protein [Source:NCBI gene (formerly Entrezgene);Acc:835746] identity=71; qcov=0.965; evalue=2.4e-165; confidence=high
Rice	`Os05g0302700` - identity=39.1; qcov=0.965; evalue=3.5e-67; confidence=medium
GO	GO:0005471 (ATP:ADP antiporter activity); GO:0005743 (mitochondrial inner membrane); GO:0140021 (mitochondrial ADP transmembrane transport); GO:1990544 (mitochondrial ATP transmembrane transport)
KEGG	-
Pfam	PF00153 (Mito_carr)
InterPro	-
eggNOG	-
NR	GeneID:130994918

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057776040.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057776040.1`
3	Mitochondrion inner membrane	线粒体内膜	1.00000	`XP_057776040.1`
4	Nucleus	细胞核	0.00000	`XP_057776040.1`
5	Chromosome	染色体	0.00000	`XP_057776040.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:56317393`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B100
`Chr7:56317393`	`GC`	`G`	1bp_deletion	CDS_variant	1	B100
`Chr7:56317530`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D1
`Chr7:56319244`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B140,C85
`Chr7:56319275`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B47,C87
`Chr7:56319278`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C2,C73
`Chr7:56319281`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B14,B83,C59
`Chr7:56319385`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B138,B22,C72,C76
`Chr7:56319443`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B27,B29,B50,C15,C8
`Chr7:56319613`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C21
`Chr7:56319668`	`GT`	`G`	1bp_deletion	frameshift_variant	1	A13
`Chr7:56319668`	`GT`	`G`	1bp_deletion	CDS_variant	1	A13

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776040.1

315 aa

158

315

Mito_carr

PF00153 Mito_carr 18-116 aa PF00153 Mito_carr 126-216 aa PF00153 Mito_carr 224-311 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776040.1`	Pfam	`PF00153`	Mito_carr	Repeat	18	116	1.1e-66	221.3	Mitochondrial carrier protein
`XP_057776040.1`	Pfam	`PF00153`	Mito_carr	Repeat	126	216	1.1e-66	221.3	Mitochondrial carrier protein
`XP_057776040.1`	Pfam	`PF00153`	Mito_carr	Repeat	224	311	1.1e-66	221.3	Mitochondrial carrier protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057920057.1
CCAAAGCGCCGCCTACTCCAAATTCCGTTGCCAATGTAAGAAATCTTGCGATAAGGAAAAATCAAGAAGATTGGGTGAAAAAAAGTTGTTGCTGCCATAAATGGATATATAGAAAAGGAAAACCAAAAGAAAAGGCCGAAGGGGAGAAAAAAGCCACCATTTTTTTTGAAATCGTTTCCCGAAAAAAAAAAAGTCTTGCAAGTTGCAACAGAATCGGGCAAGCCCATTTCGCGAGCTAGCTTGATTTTCCCCAAATTCGA...

CDS

1 records

下载 CDS FASTA

LOC130994918
ATGGCGGCGGAGGACGGCGAGGCGGGGGAGGAGAAGGGCGGTGCGCTGAGCAGTTTCCACAGGGATCTGACGGCGGGGGCGCTGATGGGGGGCGTGGTGCACACGATTGTGGCCCCCATAGAGAGGGCGAAGCTGCTGCTGCAGACGCAGGAGAGCAACGCGGCGATCTTGGCTGGCGGCCGCCACCGGAGGTTTAGAGGGATGGTTGATTGCATTGCGCGCACGATGAGAGAGGAAGGGATTTTGTCGCTGTGGAGAGG...

Protein

1 records

下载 Protein FASTA

XP_057776040.1
MAAEDGEAGEEKGGALSSFHRDLTAGALMGGVVHTIVAPIERAKLLLQTQESNAAILAGGRHRRFRGMVDCIARTMREEGILSLWRGNGSSVIRYYPSVALNFSLKDLYRNVLRENSREGSLLSGPSANFLAGSAAGCTTLIIIYPLDIAHTRLAADLGRTETRQFRGIGHFLSTIYKKDGVRGVYKGLPASLQGMVVHRGLYFGGFDTLKEMMAEGSGSDVVLWKRWAAAQAVTTAAGMLSYPLDTVRRRMMMQSGTER...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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