Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004380`

染色体: Chr07 坐标: 56344750-56348450 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004380`
名称	SmilChr07G004380
描述	uncharacterized SmilChr07G004380
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	56344750 - 56348450 / `-`

ID 对照

NCBI Gene ID	`LOC130994451`
GeneID	`130994451`
locus_tag	`-`
NCBI Name	`LOC130994451`
原始查询	`SmilChr07G004380`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os06g0484800; species=rice; confidence=low
产物	hit=Os06g0484800; species=rice; confidence=low
Arabidopsis	`AT1G43760` (AT1G43760) DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968] identity=29.6; qcov=0.278; evalue=7.41e-31; confidence=weak
Rice	`Os06g0484800` - identity=30.1; qcov=0.584; evalue=2.36e-73; confidence=low
GO	GO:0003824 (catalytic activity)
KEGG	-
Pfam	PF00078 (RVT_1); PF03372 (Exo_endo_phos); PF13966 (zf-RVT)
InterPro	-
eggNOG	-
NR	GeneID:130994451

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057775476.1`
2	Cytosol	细胞质基质	0.80000	`XP_057775476.1`
3	Nucleus	细胞核	0.40000	`XP_057775476.1`
4	Chromosome	染色体	0.00000	`XP_057775476.1`
5	Centromere	着丝粒	0.00000	`XP_057775476.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:56344754`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A4,B101,B132,B83
`Chr7:56344763`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B18,B99,C70
`Chr7:56344817`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B35,C78
`Chr7:56344819`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B47,C7
`Chr7:56344859`	`AT`	`A`	1bp_deletion	frameshift_variant	2	B128,B67
`Chr7:56344859`	`AT`	`A`	1bp_deletion	CDS_variant	2	B128,B67
`Chr7:56344868`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B101,B128,B60,B85
`Chr7:56344875`	`ATT`	`A`	2bp_deletion	frameshift_variant	10	A11,B110,B16,B33,B64,B88,B90,C15,C7,C73
`Chr7:56344878`	`C`	`CGT`	2bp_insertion	frameshift_variant	10	A11,B110,B16,B33,B64,B88,B90,C15,C7,C73
`Chr7:56344891`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B67,B91,B95,C48,D6
`Chr7:56344900`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B79
`Chr7:56344943`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C55

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775476.1

1069 aa

534

1069

Exo_endo_phos

RVT_1

zf-RVT

PF03372 Exo_endo_phos 4-148 aa PF00078 RVT_1 396-652 aa PF13966 zf-RVT 875-968 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775476.1`	Pfam	`PF03372`	Exo_endo_phos	Domain	4	148	1.1e-06	29.3	Endonuclease/Exonuclease/phosphatase family
`XP_057775476.1`	Pfam	`PF00078`	RVT_1	Domain	396	652	6.9e-33	114.9	Reverse transcriptase (RNA-dependent DNA polymerase)
`XP_057775476.1`	Pfam	`PF13966`	zf-RVT	Domain	875	968	2.3e-19	70.5	zinc-binding in reverse transcriptase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057919493.1
ATGAAAGTTCTTTCCTACAATATCCGTGGACTTGGGAGCAAAGTCAAGAAAAGAGAAATCAGAGAACTCATCCAGAAGCAAGGTATCGATTTCTGTCTTATTCAAGAATCAAAGTTGGAAAGTATTGATGAAATTGTTTTAAAGACTATCTGGGGGACGGAAAAATGCGGATTCGCCTTTAGGAAAGCAGAAGGAAGGTCAGGAGGGATTCTTTCAACGTGGAACTCATCAAGTTTTCTGAGCTCCAGCAATTGGGAGAT...

CDS

1 records

下载 CDS FASTA

LOC130994451
ATGAAAGTTCTTTCCTACAATATCCGTGGACTTGGGAGCAAAGTCAAGAAAAGAGAAATCAGAGAACTCATCCAGAAGCAAGGTATCGATTTCTGTCTTATTCAAGAATCAAAGTTGGAAAGTATTGATGAAATTGTTTTAAAGACTATCTGGGGGACGGAAAAATGCGGATTCGCCTTTAGGAAAGCAGAAGGAAGGTCAGGAGGGATTCTTTCAACGTGGAACTCATCAAGTTTTCTGAGCTCCAGCAATTGGGAGAT...

Protein

1 records

下载 Protein FASTA

XP_057775476.1
MKVLSYNIRGLGSKVKKREIRELIQKQGIDFCLIQESKLESIDEIVLKTIWGTEKCGFAFRKAEGRSGGILSTWNSSSFLSSSNWEMPGALIVNGRWIPERENLWNTIGLVIEQSRDLHVCIGGDFNSSVDWGPKPFRFINAWVSHPDFLEVVRTSWNQSGITGWRSFVFKQKFKRLKEDLKKWNKTSFGSIEENIGKLKNDICCWDAIDDTMGLEDDEIIKRNESVANLFLQLKNRDSLLSQKARDRWLTDGDVNSNYF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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