Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004387`

染色体: Chr07 坐标: 56415581-56417612 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004387`
名称	SmilChr07G004387
描述	uncharacterized SmilChr07G004387
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	56415581 - 56417612 / `-`

ID 对照

NCBI Gene ID	`LOC130994901`
GeneID	`130994901`
locus_tag	`-`
NCBI Name	`LOC130994901`
原始查询	`SmilChr07G004387`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	OsFbox646; symbol=OsFbox646; hit=Os12g0164300; species=rice; confidence=low
产物	OsFbox646; symbol=OsFbox646; hit=Os12g0164300; species=rice; confidence=low
Arabidopsis	`AT2G27520` (AT2G27520) F-box and associated interaction domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:817298] identity=27.5; qcov=0.676; evalue=2.11e-07; confidence=low
Rice	`Os12g0164300` (OsFbox646) - identity=26.5; qcov=0.637; evalue=1.08e-08; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF08268 (FBA_3); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:130994901

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057776012.1`
2	Nucleus	细胞核	0.60000	`XP_057776012.1`
3	Cytosol	细胞质基质	0.40000	`XP_057776012.1`
4	Chromosome	染色体	0.00000	`XP_057776012.1`
5	Centromere	着丝粒	0.00000	`XP_057776012.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:56415780`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr7:56415801`	`C`	`CAT`	2bp_insertion	frameshift_variant	12	B109,B114,B42,B43,B45,B59,B8,C17,C18,C36,C5,C76
`Chr7:56415930`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C78
`Chr7:56415930`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C78
`Chr7:56415936`	`A`	`ATT`	2bp_insertion	frameshift_variant	7	B11,B3,B33,B68,B75,B91,D4
`Chr7:56416085`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B124,B7,B85
`Chr7:56416090`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr7:56416105`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B40,B90,B92
`Chr7:56416110`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr7:56416131`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B47,C87,D6
`Chr7:56416289`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B138,B22,C72,C76,C9
`Chr7:56416311`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B103,B137,B34,C24,C70

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776012.1

361 aa

180

361

F-box-like

F-box

FBA_3

PF12937 F-box-like 5-43 aa PF00646 F-box 7-45 aa PF08268 FBA_3 92-233 aa

XP_057776013.1

361 aa

180

361

F-box-like

F-box

FBA_3

PF12937 F-box-like 5-43 aa PF00646 F-box 7-45 aa PF08268 FBA_3 92-233 aa

XP_057776014.1

361 aa

180

361

F-box-like

F-box

FBA_3

PF12937 F-box-like 5-43 aa PF00646 F-box 7-45 aa PF08268 FBA_3 92-233 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776012.1`	Pfam	`PF12937`	F-box-like	Domain	5	43	7.7e-08	32.7	F-box-like
`XP_057776012.1`	Pfam	`PF00646`	F-box	Domain	7	45	2.3e-08	34.3	F-box domain
`XP_057776012.1`	Pfam	`PF08268`	FBA_3	Repeat	92	233	7.3e-09	35.8	F-box associated beta propeller domain
`XP_057776013.1`	Pfam	`PF12937`	F-box-like	Domain	5	43	7.7e-08	32.7	F-box-like
`XP_057776013.1`	Pfam	`PF00646`	F-box	Domain	7	45	2.3e-08	34.3	F-box domain
`XP_057776013.1`	Pfam	`PF08268`	FBA_3	Repeat	92	233	7.3e-09	35.8	F-box associated beta propeller domain
`XP_057776014.1`	Pfam	`PF12937`	F-box-like	Domain	5	43	7.7e-08	32.7	F-box-like
`XP_057776014.1`	Pfam	`PF00646`	F-box	Domain	7	45	2.3e-08	34.3	F-box domain
`XP_057776014.1`	Pfam	`PF08268`	FBA_3	Repeat	92	233	7.3e-09	35.8	F-box associated beta propeller domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057920030.1
TAGTGTATTTCGGTTTGGGCGAGAAAATTCATTTACTTCGCCGCTGCATTTTACACAGTAGACAGAAAATAGAAAAGCTGAAATGTCTCGGCGGCGCCGCTGCTGCTCCGACTGCAGCGTTTTCGGATACCCATTCCGACATTCTTATTAGAGAATCGATGATAGACATTTGAAGTCGGGCTTATTATTTCCGGAGGTGTATAAAGGGGATGCCAACAAACATAGGGTCCCTCCCCACAGACCTATTGTTCGAAATCCTC...

XM_057920029.1
TAGTGTATTTCGGTTTGGGCGAGAAAATTCATTTACTTCGCCGCTGCATTTTACACAGTAGACAGAAAATAGAAAAGCTGAAATGTCTCGGCGGCGCCGCTGCTGCTCCGACTGCAGCGTTTTCGGATACCCATTCCGACATTCTTATTAGAGAATCGGCAGATGATAGACATTTGAAGTCGGGCTTATTATTTCCGGAGGTGTATAAAGGGGATGCCAACAAACATAGGGTCCCTCCCCACAGACCTATTGTTCGAAAT...

CDS

3 records

下载 CDS FASTA

LOC130994901
ATGCCAACAAACATAGGGTCCCTCCCCACAGACCTATTGTTCGAAATCCTCCTCCGTTTGCCGGCCGATCATCTCTACGAGAGAGTGAGGCTCGTGTGCCGGCGGTGGTACCACATTATCCATTCTCATGCCTTCATCAACGCGCAGATGCACGGTGCTACCTGTGGACTCCTCCTATCACCCCTAAATGATAATAATACTCTGCCACTTTATGTAACAGCTGACGCAGATGGTGGAATCCACACATCTGAGCTAAATCA...

Protein

3 records

下载 Protein FASTA

XP_057776012.1
MPTNIGSLPTDLLFEILLRLPADHLYERVRLVCRRWYHIIHSHAFINAQMHGATCGLLLSPLNDNNTLPLYVTADADGGIHTSELNHISKLGVLATCNGLVLELDDRRFPRLVNPTTKQSFLLPRGVSYAVVEYGFAYSAASLVCKVIAQHNVFHSPPRLQIDYGLDVLTVGVDESWRKVEDVYHLPDYVKRFFFNKAPLTSEGFLHWGRGRYCATFDVETENITLSEVPLPHQAYLERDYFYLSTGRCLSLLVACGDLS...

XP_057776013.1
MPTNIGSLPTDLLFEILLRLPADHLYERVRLVCRRWYHIIHSHAFINAQMHGATCGLLLSPLNDNNTLPLYVTADADGGIHTSELNHISKLGVLATCNGLVLELDDRRFPRLVNPTTKQSFLLPRGVSYAVVEYGFAYSAASLVCKVIAQHNVFHSPPRLQIDYGLDVLTVGVDESWRKVEDVYHLPDYVKRFFFNKAPLTSEGFLHWGRGRYCATFDVETENITLSEVPLPHQAYLERDYFYLSTGRCLSLLVACGDLS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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