当前解析结果
SmilChr07G004390| 统一新 Gene ID | SmilChr07G004390 |
|---|---|
| 名称 | SmilChr07G004390 |
| 描述 | zinc finger BED domain-containing protein RICESLEEPER 2-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 56482677 - 56483981 / + |
| NCBI Gene ID | LOC130994453 |
|---|---|
| GeneID | 130994453 |
| locus_tag | - |
| NCBI Name | LOC130994453 |
| 原始查询 | SmilChr07G004390 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc finger BED domain-containing protein RICESLEEPER 2-like |
| 产物 | zinc finger BED domain-containing protein RICESLEEPER 2-like |
| Arabidopsis | AT3G42170 (DAYSLEEPER)BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER [Source:NCBI gene (formerly Entrezgene);Acc:3769417] identity=38.7; qcov=0.307; evalue=1.48e-15; confidence=low |
| Rice | Os10g0443400- identity=33.9; qcov=0.759; evalue=9.15e-25; confidence=low |
| GO | GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF05699 (Dimer_Tnp_hAT); PF12937 (F-box-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994453 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057775477.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057775477.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057775477.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057775477.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057775477.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:56482722 |
AGG |
A |
2bp_deletion | frameshift_variant | 12 | A14,B109,B117,B122,B42,B78,C29,C30,C34,C7,C73,C87 |
Chr7:56482734 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A14,C78,C87 |
Chr7:56482738 |
G |
GGT |
2bp_insertion | frameshift_variant | 11 | A14,B109,B117,B122,B42,B78,C30,C34,C7,C73,C87 |
Chr7:56482745 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:56482750 |
T |
TA |
1bp_insertion | frameshift_variant | 7 | A20,B27,B28,B46,B98,C45,D8 |
Chr7:56482752 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B125,B25,C19,C31,D1 |
Chr7:56482759 |
TC |
T |
1bp_deletion | frameshift_variant | 19 | A3,B117,B122,B42,B78,B94,C1,C11,C15,C30,C34,C69,C72,C73,C76,C87,C9,D2,D9 |
Chr7:56482765 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A10,B71,C6 |
Chr7:56482785 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B36,B69,C29,D10 |
Chr7:56482801 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A22,B13,B47,B6,C67 |
Chr7:56482803 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C1,C76 |
Chr7:56482817 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C72,C76,C9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775477.1PF12937
F-box-like 25-61 aa
PF00646
F-box 25-65 aa
PF05699
Dimer_Tnp_hAT 198-281 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775477.1 |
Pfam | PF12937 |
F-box-like | Domain | 25 | 61 | 5.7e-08 | 33.1 | F-box-like |
XP_057775477.1 |
Pfam | PF00646 |
F-box | Domain | 25 | 65 | 1.7e-06 | 28.4 | F-box domain |
XP_057775477.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 198 | 281 | 4.3e-29 | 100.8 | hAT family C-terminal dimerisation region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。