Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004393`

染色体: Chr07 坐标: 56529144-56531576 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004393`
名称	SmilChr07G004393
描述	uncharacterized SmilChr07G004393
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	56529144 - 56531576 / `-`

ID 对照

NCBI Gene ID	`LOC130994456`
GeneID	`130994456`
locus_tag	`-`
NCBI Name	`LOC130994456`
原始查询	`SmilChr07G004393`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=high
产物	TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=high
Arabidopsis	`AT1G19260` (AT1G19260) TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509] identity=49.8; qcov=0.927; evalue=0; confidence=high
Rice	`Os02g0301400` - identity=37.4; qcov=0.509; evalue=8.42e-94; confidence=medium
GO	GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF05699 (Dimer_Tnp_hAT); PF14291 (DUF4371); PF27073 (FAM200-ZBED5_RNase-like)
InterPro	-
eggNOG	-
NR	GeneID:130994456

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057775482.1`
2	Cytoplasm	细胞质	0.20000	`XP_057775482.1`
3	Chromosome	染色体	0.00000	`XP_057775482.1`
4	Centromere	着丝粒	0.00000	`XP_057775482.1`
5	Chromatin	染色质	0.00000	`XP_057775482.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:56529158`	`G`	`A`	EMS_canonical_SNV	stop_gained	31	A18,A4,B129,B130,B137,B139,B20,B62,B65,B70,B75,B81,B89,B95,C12,C13,C14,C21,C23,C29,C46,C57,C61,C64,C68,C7,C70,C82,C85,D2,D3
`Chr7:56529168`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C12,C13,C29
`Chr7:56529212`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A3,A7
`Chr7:56529235`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr7:56529240`	`CA`	`C`	1bp_deletion	frameshift_variant	22	A22,B102,B130,B137,B70,B75,B81,B95,C12,C14,C23,C29,C35,C46,C56,C57,C64,C68,C70,C76,C85,D6
`Chr7:56529271`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B108,B36,C77,C79
`Chr7:56529305`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	C12,C29,C57,C76,C85
`Chr7:56529354`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B17,B21
`Chr7:56529396`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A21,B107,B51
`Chr7:56529407`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B140,B44,C1
`Chr7:56529441`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B29
`Chr7:56529441`	`AT`	`A`	1bp_deletion	CDS_variant	1	B29

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775482.1

810 aa

405

810

DUF4371

FAM200-ZBED5_RNase-like

Dimer_Tnp_hAT

PF14291 DUF4371 149-386 aa PF27073 FAM200-ZBED5_RNase-like 301-392 aa PF05699 Dimer_Tnp_hAT 727-787 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775482.1`	Pfam	`PF14291`	DUF4371	Domain	149	386	1.3e-97	326.7	ZMYM1/FAM200, RNase-like domain
`XP_057775482.1`	Pfam	`PF27073`	FAM200-ZBED5_RNase-like	Domain	301	392	1.8e-08	35.0	FAM200/ZBED5 RNase-like
`XP_057775482.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	727	787	7.1e-10	39.3	hAT family C-terminal dimerisation region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057919499.1
ATGGTAAAACAATCCAATCTCCAACGTTTTATGTTCAAGAAAAGAAATAGTGAGAATCCTAGTGCTAATGTCGCTCCTACAAATGATTTACCTCAAGAAAAGGCTATGGATTTGGGTGGTTTAAATTCTAATAGTGTGCCATTGGAGGAGAAAGAATTGATTTATGATGTTGAGCTTCTTCCTCATGATCCGGGAAAAAGAATTAGCATAATGGATTATCCTCCAAATATGCGCGATTCAATTAGAAGAGCCTATATTCT...

CDS

1 records

下载 CDS FASTA

LOC130994456
ATGGTAAAACAATCCAATCTCCAACGTTTTATGTTCAAGAAAAGAAATAGTGAGAATCCTAGTGCTAATGTCGCTCCTACAAATGATTTACCTCAAGAAAAGGCTATGGATTTGGGTGGTTTAAATTCTAATAGTGTGCCATTGGAGGAGAAAGAATTGATTTATGATGTTGAGCTTCTTCCTCATGATCCGGGAAAAAGAATTAGCATAATGGATTATCCTCCAAATATGCGCGATTCAATTAGAAGAGCCTATATTCT...

Protein

1 records

下载 Protein FASTA

XP_057775482.1
MVKQSNLQRFMFKKRNSENPSANVAPTNDLPQEKAMDLGGLNSNSVPLEEKELIYDVELLPHDPGKRISIMDYPPNMRDSIRRAYILKKPCQPKSHDFPQKDFGASSRRFIPSWFKKWDWLEYSIEKDAAFCFVCYLFKNEVENNVGGDAFVNGGFKSWNKPDRFTKHVGGVKSIHNLAYEKYVNLRDGKKKSILVSFDNANDLIQREYEIRLKASISCVRYLLRQGLAFRGHRESEESLNRGNFIELLKWLKAHNESIS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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