当前解析结果
SmilChr07G004399| 统一新 Gene ID | SmilChr07G004399 |
|---|---|
| 名称 | SmilChr07G004399 |
| 描述 | probable disease resistance protein At1g58390 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 56640921 - 56643699 / + |
| NCBI Gene ID | LOC130994457 |
|---|---|
| GeneID | 130994457 |
| locus_tag | - |
| NCBI Name | LOC130994457 |
| 原始查询 | SmilChr07G004399 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable disease resistance protein At1g58390 |
| 产物 | probable disease resistance protein At1g58390 |
| Arabidopsis | AT1G58390 (AT1G58390)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842208] identity=31.9; qcov=1.02; evalue=4.77e-33; confidence=low |
| Rice | Os10g0136100- identity=27.7; qcov=1.02; evalue=1.6e-20; confidence=low |
| GO | GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994457 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057775483.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057775483.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057775483.1 |
| 4 | Cytoplasm | 细胞质 | 0.20000 | XP_057775483.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057775483.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:56642491 |
G |
GCA |
2bp_insertion | frameshift_variant | 16 | A14,A18,A22,A8,B108,B122,B135,B26,B5,B62,B64,B72,B99,C13,C22,C38 |
Chr7:56642493 |
AGT |
A |
2bp_deletion | frameshift_variant | 16 | A14,A18,A22,A8,B108,B122,B135,B26,B5,B62,B64,B72,B99,C13,C22,C38 |
Chr7:56642503 |
G |
GT |
1bp_insertion | frameshift_variant | 9 | B112,B12,B136,B15,B47,B76,C41,D7,D8 |
Chr7:56642530 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr7:56642554 |
A |
AAT |
2bp_insertion | frameshift_variant | 11 | B100,B11,B128,B30,B90,B92,B93,B99,C21,C7,C71 |
Chr7:56642660 |
T |
TCG |
2bp_insertion | frameshift_variant | 4 | B130,C35,C39,C53 |
Chr7:56642660 |
T |
TCG |
2bp_insertion | CDS_variant | 4 | B130,C35,C39,C53 |
Chr7:56642668 |
A |
AC |
1bp_insertion | frameshift_variant | 3 | B130,C35,C39 |
Chr7:56642668 |
A |
AC |
1bp_insertion | CDS_variant | 3 | B130,C35,C39 |
Chr7:56642676 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B27,B6,D9 |
Chr7:56642695 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr7:56642704 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775483.1PF23559
WHD_DRP 3-80 aa
PF23598
LRR_14 137-403 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775483.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 3 | 80 | 1.1e-11 | 45.3 | Disease resistance protein Winged helix domain |
XP_057775483.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 137 | 403 | 3.1e-20 | 72.9 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。