Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004401`

染色体: Chr07 坐标: 56654180-56680353 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004401`
名称	SmilChr07G004401
描述	6,7,8-trihydroxycoumarin synthase-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	56654180 - 56680353 / `+`

ID 对照

NCBI Gene ID	`LOC130994864`
GeneID	`130994864`
locus_tag	`-`
NCBI Name	`LOC130994864`
原始查询	`SmilChr07G004401`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	6,7,8-trihydroxycoumarin synthase-like
产物	6%2C7%2C8-trihydroxycoumarin synthase-like
Arabidopsis	`AT4G31500` (CYP83B1) cytochrome P450, family 83, subfamily B, polypeptide 1 [Source:NCBI gene (formerly Entrezgene);Acc:829277] identity=44.7; qcov=1.03; evalue=2.44e-114; confidence=medium
Rice	`Os09g0275400` - identity=40.5; qcov=1.02; evalue=6.24e-89; confidence=medium
GO	GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding)
KEGG	-
Pfam	PF00067 (p450)
InterPro	-
eggNOG	-
NR	GeneID:130994864

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057775957.1`
2	Endoplasmic reticulum membrane	内质网膜	0.80000	`XP_057775957.1`
3	Nucleus	细胞核	0.00000	`XP_057775957.1`
4	Chromosome	染色体	0.00000	`XP_057775957.1`
5	Centromere	着丝粒	0.00000	`XP_057775957.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:56654365`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C78
`Chr7:56654373`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B92
`Chr7:56654409`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr7:56654434`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B16,B45
`Chr7:56654452`	`TG`	`T`	1bp_deletion	frameshift_variant	2	B120,B18
`Chr7:56654452`	`TG`	`T`	1bp_deletion	CDS_variant	2	B120,B18
`Chr7:56654490`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B120,B18
`Chr7:56654496`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A11,D8
`Chr7:56654506`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B105,C10
`Chr7:56654520`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B34,C85,D10
`Chr7:56654532`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B29,B65,B91,C29,C77
`Chr7:56654544`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B136,B58,C48,C72

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775957.1

493 aa

246

493

p450

PF00067 p450 30-484 aa

XP_057775958.1

368 aa

184

368

p450

PF00067 p450 1-359 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775957.1`	Pfam	`PF00067`	p450	Domain	30	484	6.7e-107	358.8	Cytochrome P450
`XP_057775958.1`	Pfam	`PF00067`	p450	Domain	1	359	1.8e-85	288.2	Cytochrome P450

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057919975.1
ATTAGCCAAAGAAGTTTTGAAAAATCAAGATTCAACTTTTTGCAGCCGGCCACAATCTCTAGGGCAGCAAAAAATTTCCTACAACAACTCCGACATAATCTTCTCACCATACAATGAGTATTGCAAGGAGATGAGAAAAATCACAACCATTCATCTCCTAAGCCCTAAAAAAGTCCAATCCTTTCGCCCCATCCGCGAAGACGAGATTTCTCGTATGATCTCGAAGATTCGGGAAGCTTCCGATGAAAATCGAGCTGTGA...

XM_057919974.1
TCAACTATCAATTACCACAACCTAATTCTTCAACATTTATCACAACATTCATTCACAATGATACTCCTATTCTCAATAATTCTCCCAATAATCTTGATCTTTTATCTTCTCCACAAAACCAAAACCCCACCAAAAACCCCTCTCCCACCGGGCCCGCCGCCCCTGCCGTTGATCGGAAACCTCCACCACCTCGCCGCCGCCCCAAACCTACACCTCTACCTCCACCAACTCACCAAAAAATACGGTCCCATTATCCACAT...

CDS

2 records

下载 CDS FASTA

LOC130994864
ATGAGAAAAATCACAACCATTCATCTCCTAAGCCCTAAAAAAGTCCAATCCTTTCGCCCCATCCGCGAAGACGAGATTTCTCGTATGATCTCGAAGATTCGGGAAGCTTCCGATGAAAATCGAGCTGTGAATATGAGTGAAATGGCTGTCTCACTCGGCATTAACTTGATATGCAAGATTGCCTTCGGCAAGGAATGTTCTAGAAGGTTCGATGAGCTTCTAGAAGAAGTTCAGGCCGTGGCCGTGGCTTTCTACATGTC...

LOC130994864
ATGATACTCCTATTCTCAATAATTCTCCCAATAATCTTGATCTTTTATCTTCTCCACAAAACCAAAACCCCACCAAAAACCCCTCTCCCACCGGGCCCGCCGCCCCTGCCGTTGATCGGAAACCTCCACCACCTCGCCGCCGCCCCAAACCTACACCTCTACCTCCACCAACTCACCAAAAAATACGGTCCCATTATCCACATGAAATTAGGTCCAATTCCTCTCCTAGTAGTTTCCTCACCAAAATTAGCCAAAGAAGT...

Protein

2 records

下载 Protein FASTA

XP_057775957.1
MILLFSIILPIILIFYLLHKTKTPPKTPLPPGPPPLPLIGNLHHLAAAPNLHLYLHQLTKKYGPIIHMKLGPIPLLVVSSPKLAKEVLKNQDSTFCSRPKSLGQQKISYNNSDIIFSPYNEYCKEMRKITTIHLLSPKKVQSFHPIREGEISRMISKIREASDENLAVNMSEMAVSLGINLICNIAFGKECSRRFDELLEEVQAVAVAFYVSDYFPAFGWVDKLTGMIGRLDSAVKKMDSFYQELIDEHLDRKRVKEVEE...

XP_057775958.1
MRKITTIHLLSPKKVQSFRPIREDEISRMISKIREASDENRAVNMSEMAVSLGINLICKIAFGKECSRRFDELLEEVQAVAVAFYMSDYFMAFGWVDKLTGMIGRLDSAVKKMDSFYQELIDEHLDRKRVKEVEEEDGDVLDVLIQLKMQHKIPSIDFGWDNIKAMLMDIFIAGAETSSSVIIWTMTALMKSPNIMEKLQNEIRSLIGKKGRVYEDDLPKLEYLRAVVNESMRLYPPGPLLVPRQTIERCTLEGYQIQPK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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