当前解析结果
SmilChr07G004435| 统一新 Gene ID | SmilChr07G004435 |
|---|---|
| 名称 | SmilChr07G004435 |
| 描述 | protein phosphatase 2C 50-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 57034968 - 57037260 / - |
| NCBI Gene ID | LOC130995051 |
|---|---|
| GeneID | 130995051 |
| locus_tag | - |
| NCBI Name | LOC130995051 |
| 原始查询 | SmilChr07G004435 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein phosphatase 2C 50-like |
| 产物 | protein phosphatase 2C 50-like |
| Arabidopsis | AT1G72770 (HAB1)HYPERSENSITIVE TO ABA1 [Source:NCBI gene (formerly Entrezgene);Acc:843609] identity=59.9; qcov=0.682; evalue=8.45e-145; confidence=high |
| Rice | Os01g0583100 (OsPP2C06/OsABI2)- identity=59.6; qcov=0.671; evalue=4.41e-137; confidence=high |
| GO | GO:0004722 (protein serine/threonine phosphatase activity); GO:0006470 (protein dephosphorylation); GO:0043169 (cation binding) |
| KEGG | smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00481 (PP2C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995051 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057776185.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057776185.1 |
| 3 | Cytoplasm | 细胞质 | 0.60000 | XP_057776185.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057776185.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057776185.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:57035207 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B118,B36,B88 |
Chr7:57035237 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B101,B131,B24,B53,D5 |
Chr7:57035331 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B60 |
Chr7:57035352 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B89,C27,C43 |
Chr7:57035380 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B13,B51,B61,C50,C61 |
Chr7:57035391 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C2,C23,C73 |
Chr7:57035449 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B21,C80,D7 |
Chr7:57035769 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | B40 |
Chr7:57035769 |
TA |
T |
1bp_deletion | CDS_variant | 1 | B40 |
Chr7:57035817 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A25,C47 |
Chr7:57035827 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B129,B29,B69,C33,D6 |
Chr7:57035835 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A25,C47 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057776185.1PF00481
PP2C 222-473 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776185.1 |
Pfam | PF00481 |
PP2C | Family | 222 | 473 | 7.1e-61 | 206.8 | Protein phosphatase 2C |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。