Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004436`

染色体: Chr07 坐标: 57038303-57041524 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004436`
名称	SmilChr07G004436
描述	uncharacterized SmilChr07G004436
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	57038303 - 57041524 / `-`

ID 对照

NCBI Gene ID	`LOC130994468`
GeneID	`130994468`
locus_tag	`-`
NCBI Name	`LOC130994468`
原始查询	`SmilChr07G004436`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Zinc knuckle (CCHC-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:825884]; symbol=AT4G05360; hit=AT4G05360; species=arabidopsis; confidence=low
产物	Zinc knuckle (CCHC-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:825884]; symbol=AT4G05360; hit=AT4G05360; species=arabidopsis; confidence=low
Arabidopsis	`AT4G05360` (AT4G05360) Zinc knuckle (CCHC-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:825884] identity=27; qcov=0.338; evalue=8.2e-18; confidence=low
Rice	`Os08g0125300` - identity=26.6; qcov=0.208; evalue=5.47e-17; confidence=weak
GO	GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF13976 (gag_pre-integrs); PF14223 (Retrotran_gag_2); PF22936 (Pol_BBD)
InterPro	-
eggNOG	-
NR	GeneID:130994468

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057775493.1`
2	Nucleus	细胞核	0.20000	`XP_057775493.1`
3	Cytosol	细胞质基质	0.20000	`XP_057775493.1`
4	Chromosome	染色体	0.00000	`XP_057775493.1`
5	Centromere	着丝粒	0.00000	`XP_057775493.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:57038715`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A7,B122,B71,B81
`Chr7:57038750`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A7,B122,B71,B81
`Chr7:57038897`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A2,B71,D4
`Chr7:57039080`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B84,C41
`Chr7:57039083`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr7:57039091`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B100,B55,C23
`Chr7:57039101`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:57039128`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B39,D7
`Chr7:57039152`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr7:57039170`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr7:57039183`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr7:57039264`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775493.1

1031 aa

516

1031

Retrotran_gag_2

Pol_BBD

gag_pre-integrs

PF14223 Retrotran_gag_2 55-210 aa PF22936 Pol_BBD 608-682 aa PF13976 gag_pre-integrs 720-759 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775493.1`	Pfam	`PF14223`	Retrotran_gag_2	Domain	55	210	6.3e-22	78.8	gag-polypeptide of LTR copia-type
`XP_057775493.1`	Pfam	`PF22936`	Pol_BBD	Domain	608	682	4.2e-17	63.0	Pol polyprotein, beta-barrel domain
`XP_057775493.1`	Pfam	`PF13976`	gag_pre-integrs	Domain	720	759	5.1e-08	33.3	GAG-pre-integrase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057919510.1
ATGGCGCTGCAAAGAGAAGGTGGGTCTGTTGTGAGACCACCCCTACTTGATGGAAGCAATTATATCTACTGGAAAATGCGAATGACTTCCTTCATTCGTGCGGTCGATGAGAATGCTTGGACTTCTGTTGAAGAAGGATGGACTGCCCCAAGTGATGAGGAGGGAAAACTGAAGCCCAGAAACAAGTGGACGACTACTGAATTGGCAGCTTCCAATGCCAATCAAAAGGCGCTGAATTCCATTCAAAATGCAGTAACCAT...

CDS

1 records

下载 CDS FASTA

LOC130994468
ATGGCGCTGCAAAGAGAAGGTGGGTCTGTTGTGAGACCACCCCTACTTGATGGAAGCAATTATATCTACTGGAAAATGCGAATGACTTCCTTCATTCGTGCGGTCGATGAGAATGCTTGGACTTCTGTTGAAGAAGGATGGACTGCCCCAAGTGATGAGGAGGGAAAACTGAAGCCCAGAAACAAGTGGACGACTACTGAATTGGCAGCTTCCAATGCCAATCAAAAGGCGCTGAATTCCATTCAAAATGCAGTAACCAT...

Protein

1 records

下载 Protein FASTA

XP_057775493.1
MALQREGGSVVRPPLLDGSNYIYWKMRMTSFIRAVDENAWTSVEEGWTAPSDEEGKLKPRNKWTTTELAASNANQKALNSIQNAVTMEVFALISMCDNAKEAWDVLMSTYEGNSKVKKQRLQQLATKFEELRMDENEDISTFHGKLLALANESFSLGERIPEEKLVRKVMRALPERFDYKLTAIDEARDISDMKLEELIGSLRTFEMNLRPERTEKKKSIAFVADSGNSKKGSTKYDSDDLIESLALFTKKFGKAFNKFK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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