Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004472`

染色体: Chr07 坐标: 57277485-57281112 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004472`
名称	SmilChr07G004472
描述	RNA-binding protein 2-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	57277485 - 57281112 / `-`

ID 对照

NCBI Gene ID	`LOC130995078`
GeneID	`130995078`
locus_tag	`-`
NCBI Name	`LOC130995078`
原始查询	`SmilChr07G004472`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RNA-binding protein 2-like
产物	RNA-binding protein 2-like
Arabidopsis	`AT1G76940` (AT1G76940) RNA-binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:844029] identity=43.6; qcov=0.45; evalue=1.36e-33; confidence=medium
Rice	`Os06g0127500` - identity=57; qcov=0.358; evalue=7.69e-32; confidence=low
GO	GO:0003729 (mRNA binding)
KEGG	-
Pfam	PF00076 (RRM_1)
InterPro	-
eggNOG	-
NR	GeneID:130995078

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057776208.1`
2	Cytoplasm	细胞质	0.20000	`XP_057776209.1`
3	Chromosome	染色体	0.00000	`XP_057776208.1`
4	Centromere	着丝粒	0.00000	`XP_057776208.1`
5	Chromatin	染色质	0.00000	`XP_057776208.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:57277848`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A11
`Chr7:57277915`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr7:57278002`	`G`	`A`	EMS_canonical_SNV	stop_gained	81	A14,A18,A2,A23,A25,A4,A7,A8,A9,B105,B11,B110,B111,B115,B119,B120,B121,B122,B126,B130,B132,B134,B135,B136,B14,B16,B19,B20,B21,B23,B24,B26,B3,B30,B32,B41,B45,B50,B51,B52,B54,B57,B58,B59,B6,B73,B77,B79,B81,B83,B86,B87,B9,B98,C18,C2,C22,C25,C26,C30,C32,C36,C4,C47,C48,C49,C50,C51,C53,C6,C60,C63,C68,C70,C74,C82,C83,C86,C87,D11,D4
`Chr7:57278044`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B56,B82,B96
`Chr7:57278045`	`CA`	`C`	1bp_deletion	frameshift_variant	96	A1,A10,A13,A14,A2,A20,A22,A25,A4,A7,A8,B100,B102,B105,B109,B111,B117,B12,B120,B121,B124,B126,B127,B132,B134,B135,B136,B138,B14,B16,B17,B19,B20,B21,B23,B24,B30,B32,B34,B35,B40,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B64,B66,B77,B78,B81,B82,B83,B87,B88,B89,B9,B91,B95,B96,B98,C1,C13,C22,C24,C25,C29,C3,C32,C37,C4,C42,C43,C44,C45,C49,C50,C56,C6,C60,C63,C68,C70,C74,C78,C80,C82,D11,D4,D9
`Chr7:57278048`	`A`	`AAG`	2bp_insertion	frameshift_variant	15	A7,B119,B121,B125,B26,B40,B46,B93,B98,C19,C20,C3,C48,C62,C83
`Chr7:57278077`	`GAA`	`G`	2bp_deletion	frameshift_variant	1	C44
`Chr7:57278077`	`GAA`	`G`	2bp_deletion	CDS_variant	1	C44
`Chr7:57279246`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B108,B112,B13,D7
`Chr7:57279644`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A3
`Chr7:57280793`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776208.1

282 aa

141

282

RRM_1

PF00076 RRM_1 181-252 aa

XP_057776209.1

262 aa

131

262

RRM_1

PF00076 RRM_1 159-226 aa

XP_057776211.1

260 aa

130

260

RRM_1

PF00076 RRM_1 159-230 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776208.1`	Pfam	`PF00076`	RRM_1	Domain	181	252	8.4e-12	45.5	RNA recognition motif
`XP_057776209.1`	Pfam	`PF00076`	RRM_1	Domain	159	226	5.7e-10	39.6	RNA recognition motif
`XP_057776211.1`	Pfam	`PF00076`	RRM_1	Domain	159	230	7.2e-12	45.7	RNA recognition motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057920226.1
TTGAATATTAAATCGAAAACTTCATTAATTTTCTCTAACCAAAGATAAAACATAAAACCCTATTTTGAAACAAAATTCATCACAATTCTTTTCCTTAAAATGGGGGATCCTTACTGGCGATATCCCGGCGCCGGAGGTCGTCCGTCATCATCGGAGATAGGACACGTACCTCAGGCAACTTTTCCAGGCTACTTGTCGTCTGAACCTCAGGCAACTTTTCCAGGTTACTTGTCGTCTGAAACATCAACTCTCGCCAATTA...

XM_057920228.1
GAATATTAAATCGAAAACTTCATTAATTTTCTCTAACCAAAGATAAAACATAAAACCCTATTTTGAAACAAAATTCATCACAATTCTTTTCCTTAAAATGGGGGATCCTTACTGGCGATATCCCGGCGCCGGAGGTCGTCCGTCATCATCGGAGATAGGACACGTACCTCAGGCAACTTTTCCAGGCTACTTGTCGTCTGAACCTCAGGCAACTTTTCCAGGTTACTTGTCGTCTGAAACATCAACTCTCGCCAATTATA...

CDS

3 records

下载 CDS FASTA

LOC130995078
ATGGGGGATCCTTACTGGCGATATCCCGGCGCCGGAGGTCGTCCGTCATCATCGGAGATAGGACACGTACCTCAGGCAACTTTTCCAGGCTACTTGTCGTCTGAACCTCAGGCAACTTTTCCAGGTTACTTGTCGTCTGAAACATCAACTCTCGCCAATTATAATGCGTATAGCTCCGTTGATCCACGGACTGCTTCCTCAGATTTTTTACATAAAGATATCATATCATCCCGCTCTGGGGCATATGGCATAGATGACAT...

LOC130995078
ATGGGGGATCCTTACTGGCGATATCCCGGCGCCGGAGGTCGTCCGTCATCATCGGAGATAGATATTGGATTATTCGAGCTCATTATGAGTCATTATGTAGCGTTGAAGATAGTTTGTTTGATTATTGGACACGTACCTCAGGCAACTTTTCCAGGCTACTTGTCGTCTGAACCTCAGGCAACTTTTCCAGGTTACTTGTCGTCTGAAACATCAACTCTCGCCAATTATAATGCGTATAGCTCCGTTGATCCACGGACTGC...

Protein

3 records

下载 Protein FASTA

XP_057776208.1
MGDPYWRYPGAGGRPSSSEIDIGLFELIMSHYVALKIVCLIIGHVPQATFPGYLSSEPQATFPGYLSSETSTLANYNAYSSVDPRTASSDFLHKDIISSRSGAYGIDDIPSVRAEPDITGLVAGASYRGYPSSYEDPNVSVRQRDVASGINAVNPDVGYDKPSSITRTDGNTVPAAESNILFIDGLPTDCTRREIGHLFRPFIGFREIRLVHKEPRRRGDKAMVLCFVEFTDAKCAVTAMEALQGYKFDDKKPEAPLLRI...

XP_057776209.1
MGDPYWRYPGAGGRPSSSEIGHVPQATFPGYLSSEPQATFPGYLSSETSTLANYNAYSSVDPRTASSDFLHKDIISSRSGAYGIDDIPSVRAEPDITGLVAGASYRGYPSSYEDPNVSVRQRDVASGINAVNPDVGYDKPSSITRTDGNTVPAAESNILFIDGLPTDCTRREIGHLFRPFIGFREIRLVHKEPRRRGDKAMVLCFVEFTDAKCAVTAMEALQGFIFISPSFQFSPPTHPTFLDNLPVAAYQHKIGFRSHV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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