Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004473`

染色体: Chr07 坐标: 57282919-57287557 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004473`
名称	SmilChr07G004473
描述	uncharacterized SmilChr07G004473
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	57282919 - 57287557 / `+`

ID 对照

NCBI Gene ID	`LOC130994481`
GeneID	`130994481`
locus_tag	`-`
NCBI Name	`LOC130994481`
原始查询	`SmilChr07G004473`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859]; symbol=MUG7; hit=AT3G05850; species=arabidopsis; confidence=weak
产物	MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859]; symbol=MUG7; hit=AT3G05850; species=arabidopsis; confidence=weak
Arabidopsis	`AT3G05850` (MUG7) MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3768859] identity=23.4; qcov=0.919; evalue=1.37e-51; confidence=weak
Rice	`Os10g0104700` - identity=26.1; qcov=0.678; evalue=5.04e-46; confidence=low
GO	GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF00872 (Transposase_mut); PF04434 (SWIM); PF10551 (MULE)
InterPro	-
eggNOG	-
NR	GeneID:130994481

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057775507.1`
2	Chromosome	染色体	0.00000	`XP_057775507.1`
3	Centromere	着丝粒	0.00000	`XP_057775507.1`
4	Chromatin	染色质	0.00000	`XP_057775507.1`
5	Telomere	端粒	0.00000	`XP_057775507.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:57282928`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B130,B54,C20
`Chr7:57282934`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A15,B14,B27,B81,D8
`Chr7:57282968`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B131,B89,B95,B99,C80
`Chr7:57282977`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A16,B26,C43
`Chr7:57283007`	`G`	`A`	EMS_canonical_SNV	stop_gained	98	A10,A13,A14,A15,A19,A20,A5,B100,B101,B105,B107,B108,B109,B11,B111,B112,B114,B115,B120,B124,B127,B128,B131,B133,B134,B135,B137,B138,B20,B21,B23,B25,B26,B27,B30,B33,B38,B39,B44,B45,B53,B55,B56,B57,B6,B64,B65,B66,B71,B72,B76,B77,B78,B80,B85,B88,B9,B91,B96,B98,C11,C17,C20,C28,C29,C31,C33,C4,C40,C42,C43,C44,C45,C46,C49,C5,C50,C51,C52,C55,C58,C6,C61,C67,C69,C73,C77,C80,C82,C83,C84,C86,C87,C9,D10,D5,D8,D9
`Chr7:57283008`	`G`	`A`	EMS_canonical_SNV	stop_gained	12	A14,A19,B120,B124,B133,B25,B30,B72,B76,B98,C20,C50
`Chr7:57283019`	`G`	`A`	EMS_canonical_SNV	stop_gained	5	A5,B43,B83,C18,C70
`Chr7:57283019`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A5,B43,B83,C18,C70
`Chr7:57283024`	`C`	`T`	EMS_canonical_SNV	stop_gained	138	A1,A10,A11,A15,A18,A19,A20,A24,A25,A3,A4,A6,B1,B10,B100,B101,B103,B109,B110,B112,B113,B114,B117,B12,B121,B123,B124,B125,B126,B128,B129,B13,B130,B131,B132,B134,B137,B139,B14,B19,B2,B22,B24,B25,B26,B27,B29,B3,B30,B31,B33,B35,B36,B37,B38,B40,B41,B42,B43,B45,B49,B5,B52,B57,B58,B59,B6,B60,B61,B64,B65,B66,B67,B68,B7,B70,B73,B74,B75,B8,B81,B83,B86,B89,B91,B98,B99,C15,C18,C2,C20,C21,C22,C27,C34,C35,C36,C4,C40,C41,C42,C44,C48,C49,C5,C51,C55,C56,C57,C58,C59,C60,C61,C62,C63,C64,C66,C67,C69,C7,C70,C71,C74,C75,C76,C77,C80,C81,C83,C87,C9,D1,D11,D2,D3,D5,D7,D9
`Chr7:57284979`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:57285072`	`C`	`T`	EMS_canonical_SNV	stop_gained	4	B22,B38,B39,C6
`Chr7:57285072`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B22,B38,B39,C6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775507.1

878 aa

439

878

MULE

Transposase_mut

SWIM

PF10551 MULE 460-554 aa PF00872 Transposase_mut 460-558 aa PF04434 SWIM 703-732 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775507.1`	Pfam	`PF10551`	MULE	Domain	460	554	2.7e-19	70.1	MULE transposase domain
`XP_057775507.1`	Pfam	`PF00872`	Transposase_mut	Family	460	558	5.6e-08	32.8	Transposase, Mutator family
`XP_057775507.1`	Pfam	`PF04434`	SWIM	Domain	703	732	5.8e-06	26.4	SWIM zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057919524.1
ATGGAAGTTGAGGCAGTGGAGAAAATATCCTCCTCCGATAACGGCGGCGGTGGAGGAGCAGCCACCTGTGGTGGCGGCTGTAATGGCTGGATGGAGCCATGGCTGCAGATGTCGTTTCAAGCAATCGTTATACGGCACAGTGGTCAGTGGAAATTAACCGAGTATGAAAGAGGCGATGAGGTTGTCGTGTACATGTCTAAGGAAGACCTTTGTCATGCGAAGTTGATGCAAGAGGTGCACGATCAATTAAACGAGGATGG...

CDS

1 records

下载 CDS FASTA

LOC130994481
ATGGAAGTTGAGGCAGTGGAGAAAATATCCTCCTCCGATAACGGCGGCGGTGGAGGAGCAGCCACCTGTGGTGGCGGCTGTAATGGCTGGATGGAGCCATGGCTGCAGATGTCGTTTCAAGCAATCGTTATACGGCACAGTGGTCAGTGGAAATTAACCGAGTATGAAAGAGGCGATGAGGTTGTCGTGTACATGTCTAAGGAAGACCTTTGTCATGCGAAGTTGATGCAAGAGGTGCACGATCAATTAAACGAGGATGG...

Protein

1 records

下载 Protein FASTA

XP_057775507.1
MEVEAVEKISSSDNGGGGGAATCGGGCNGWMEPWLQMSFQAIVIRHSGQWKLTEYERGDEVVVYMSKEDLCHAKLMQEVHDQLNEDGRSTYMLFYTSTTDEGRKIKVALKADSDLNRLISEHKKYPVVYVIEKGKQSAAPVPQTQERVYYEGQRSTVFPIETDVGRSIPTHDDSRNDSSSQEEEDESESSDEEEEAIRRREILDSVSTEQEAWRQTGPQNFTSDDQPDVEPRVGVQQLEARDWGIPVLDFDEGWDDSNVL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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