Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004494`

染色体: Chr07 坐标: 57563615-57569980 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004494`
名称	SmilChr07G004494
描述	putative late blight resistance protein homolog R1C-3
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	57563615 - 57569980 / `+`

ID 对照

NCBI Gene ID	`LOC130995096`
GeneID	`130995096`
locus_tag	`-`
NCBI Name	`LOC130995096`
原始查询	`SmilChr07G004494`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1C-3
产物	putative late blight resistance protein homolog R1C-3
Arabidopsis	`AT5G35450` (AT5G35450) Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=27.3; qcov=0.902; evalue=2.73e-47; confidence=low
Rice	`Os02g0272900` - identity=32.1; qcov=0.655; evalue=6.44e-55; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:130995096

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057776230.1`
2	Cytoplasm	细胞质	0.40000	`XP_057776231.1`
3	Cytosol	细胞质基质	0.40000	`XP_057776231.1`
4	Endoplasmic reticulum	内质网	0.20000	`XP_057776231.1`
5	Endoplasmic reticulum membrane	内质网膜	0.20000	`XP_057776231.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:57564466`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C12
`Chr7:57564467`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B100,B104,B119,B70
`Chr7:57564482`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B105,B28,B91
`Chr7:57564508`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A14,B87,D1
`Chr7:57564512`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A6,B65,B75,C42
`Chr7:57564532`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A6,B6,C63
`Chr7:57564549`	`C`	`T`	EMS_canonical_SNV	stop_gained	4	A11,B64,B80,C71
`Chr7:57564549`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,B64,B80,C71
`Chr7:57564581`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B105,B28,B91
`Chr7:57564613`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B28
`Chr7:57564638`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B41,B88,B90,C69
`Chr7:57564652`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B16

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776230.1

904 aa

452

904

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 168-336 aa PF23559 WHD_DRP 421-491 aa PF23598 LRR_14 539-825 aa

XP_057776231.1

724 aa

362

724

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 69-156 aa PF23559 WHD_DRP 241-311 aa PF23598 LRR_14 359-645 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776230.1`	Pfam	`PF00931`	NB-ARC	Domain	168	336	4.1e-36	124.9	NB-ARC domain
`XP_057776230.1`	Pfam	`PF23559`	WHD_DRP	Domain	421	491	1.4e-16	61.0	Disease resistance protein Winged helix domain
`XP_057776230.1`	Pfam	`PF23598`	LRR_14	Repeat	539	825	1.7e-14	54.1	Leucine-rich repeat region
`XP_057776231.1`	Pfam	`PF00931`	NB-ARC	Domain	69	156	1.1e-16	61.5	NB-ARC domain
`XP_057776231.1`	Pfam	`PF23559`	WHD_DRP	Domain	241	311	1.1e-16	61.3	Disease resistance protein Winged helix domain
`XP_057776231.1`	Pfam	`PF23598`	LRR_14	Repeat	359	645	1e-14	54.8	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920247.1
AATATTCTTATTAATAAAAATAAACATTATTTTGAAGAAATGTAATATTTTTAAAACATTACCTTCCATCATATCAATAATTAATTAAAAAATCAAAATTAATGCCAGCCATTTAAATTAAAAAAAAAAAAAAACGAAATCGGCGAAAAGGGGCAGCCAAATCAACAATTCCCCTGATAATCTACCAACTCCAGCGCAGTCTATTTTCATGTAGCAACAAGCATCACCTCTGCCTTCGGATAAATGCTTAAGAGGTTCGA...

XM_057920248.1
GACTTCTACCACGATCTACAACAAGTGATAGAAGAAATGAATTTGATCAAGAAGGAAGCCATGGAGATTGCAACCGCAGCTGATCAACTGCAGAGAAAGGTCTCATTTACTCATGCTGCCTCCTCTTCAACTGTGAAGGAAAGCATAATGGTGGGCTTCGACCAGGTGTTACGTGAAGTGCTGGATAAGCTCACCGAAGATCATGGCAGTCTCCAAATCATCCCAATTATGGGGATGGGCGGCATTGGTAAAACCACTCT...

CDS

2 records

下载 CDS FASTA

LOC130995096
ATGATGGCGGCTTATGGAGCTCTGGTTTCTCTGATGCATATCATAGATCGCATCGAAAATCATCCTTCCCCTCCAATTTCTATCGACAAACAGCAAGTTGAATCTCTCACTGAAAATGTTACCTTCTTGCAGGATTTTCTTGATGCTTATATTTCTCCAGTTGTCGATGACCATGAAGCGGATCCATTGGAGCGTCGCATTGCAGATGCAGTTTATGCAGCTGAGGATGTCATCGAATCCCAAATTGTGCTTCAAATTCA...

LOC130995096
ATGGCAGTCTCCAAATCATCCCAATTATGGGGATGGGCGGCATTGGTAAAACCACTCTTGCCCGACATCTATTTGAGCATGCTGTTGTTAAAAAGCATTTTTATATTCGTGCTTGGACTACGATATCTCAAACTTATAATGTTAGAGAAACACTTAGAGAAGTTCTTTTTCAAGCAAGTGGGGATTTGGGTAGTGATGATGATAGATGAGAGAGAATTGCGATTAAAACTATACCAGTATTTATGGGGCAGGAGGTATCT...

Protein

2 records

下载 Protein FASTA

XP_057776230.1
MMAAYGALVSLMHIIDRIENHPSPPISIDKQQVESLTENVTFLQDFLDAYISPVVDDHEADPLERRIADAVYAAEDVIESQIVLQIHNRSRIRGKMSCFINLFRARFKCATIEEDFYHDLQQVIEEMNLIKKEAMEIATAADQLQRKVSFTHAASSSTVKESIMVGFDQVLREVLDKLTEDHGSLQIIPIMGMGGIGKTTLARHLFEHAVVKKHFYIRAWTTISQTYNVRETLREVLFQASGDLGNDLSERELRLKLYQY...

XP_057776231.1
MAVSKSSQLWGWAALVKPLLPDIYLSMLLLKSIFIFVLGLRYLKLIMLEKHLEKFFFKQVGIWVVMMIDERELRLKLYQYLWGRRYLIIMDDMWSIEVWDKIRFSFPDCKNNGSRIIVTTRLSNLNLQLNEYYGVSMKFLDEASSMDLFTNTVFGGESLPHELEDIGKSIVANCKGLPLSIATIGGLLAKSERTTEYWMRIEQNLNSIVNTNNDEFCLKILRMSYTYLPNYLKPCFLYMGVFKEDRSIRVSMLKKLWVSE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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