Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004508`

染色体: Chr07 坐标: 57743332-57745085 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004508`
名称	SmilChr07G004508
描述	uncharacterized SmilChr07G004508
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	57743332 - 57745085 / `-`

ID 对照

NCBI Gene ID	`LOC130994490`
GeneID	`130994490`
locus_tag	`-`
NCBI Name	`LOC130994490`
原始查询	`SmilChr07G004508`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Nucleic acid-binding, OB-fold-like protein [Source:NCBI gene (formerly Entrezgene);Acc:841728]; symbol=AT1G52950; hit=AT1G52950; species=arabidopsis; confidence=low
产物	Nucleic acid-binding, OB-fold-like protein [Source:NCBI gene (formerly Entrezgene);Acc:841728]; symbol=AT1G52950; hit=AT1G52950; species=arabidopsis; confidence=low
Arabidopsis	`AT1G52950` (AT1G52950) Nucleic acid-binding, OB-fold-like protein [Source:NCBI gene (formerly Entrezgene);Acc:841728] identity=27.2; qcov=0.869; evalue=3.56e-09; confidence=low
Rice	`Os02g0776800` (RPA1A) - identity=22.9; qcov=0.938; evalue=2.12e-08; confidence=weak
GO	-
KEGG	-
Pfam	PF16900 (REPA_OB_2)
InterPro	-
eggNOG	-
NR	GeneID:130994490

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057775516.1`
2	Chromosome	染色体	0.00000	`XP_057775516.1`
3	Centromere	着丝粒	0.00000	`XP_057775516.1`
4	Chromatin	染色质	0.00000	`XP_057775516.1`
5	Telomere	端粒	0.00000	`XP_057775516.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:57743422`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B95,C54,C62
`Chr7:57743768`	`AT`	`A`	1bp_deletion	frameshift_variant	6	B117,B3,B64,B78,C22,C38
`Chr7:57743786`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A21,B10,B55,C72,C82
`Chr7:57743847`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	B75,D8
`Chr7:57743847`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B75,D8
`Chr7:57743878`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B122,B4,B55,C39,C85
`Chr7:57743894`	`AG`	`A`	1bp_deletion	frameshift_variant	1	B59
`Chr7:57743894`	`AG`	`A`	1bp_deletion	CDS_variant	1	B59
`Chr7:57743978`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B82,C59,C7,D5
`Chr7:57744001`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B71,B76
`Chr7:57744044`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B129,B94,C45,C74
`Chr7:57744053`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B138,B14,C36

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775516.1

275 aa

138

275

REPA_OB_2

PF16900 REPA_OB_2 35-132 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775516.1`	Pfam	`PF16900`	REPA_OB_2	Domain	35	132	1.9e-06	28.4	Replication protein A OB domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057919533.1
ATGAGTGGAAAATCAGTTTTAGCTTTAGAACCATTAATTGTTTCTGAATCAACTGAACGCCCGAATATTACTGAAAATGGATTTGATTTCATCCATTTTCGAAATATTCATTCACATGATCCAGAATTGGTATTGGATATTCTTGGGGAGGTAAAAACTGAAAATATTACCATAGATTGTGTTGAAATGAAGCATGGCAAAGCTAAGAAGTGTGACATAACATTGGCTGATGCAGATGGCACACAAGTAATTTGCGTATT...

CDS

1 records

下载 CDS FASTA

LOC130994490
ATGAGTGGAAAATCAGTTTTAGCTTTAGAACCATTAATTGTTTCTGAATCAACTGAACGCCCGAATATTACTGAAAATGGATTTGATTTCATCCATTTTCGAAATATTCATTCACATGATCCAGAATTGGTATTGGATATTCTTGGGGAGGTAAAAACTGAAAATATTACCATAGATTGTGTTGAAATGAAGCATGGCAAAGCTAAGAAGTGTGACATAACATTGGCTGATGCAGATGGCACACAAGTAATTTGCGTATT...

Protein

1 records

下载 Protein FASTA

XP_057775516.1
MSGKSVLALEPLIVSESTERPNITENGFDFIHFRNIHSHDPELVLDILGEVKTENITIDCVEMKHGKAKKCDITLADADGTQVICVLWESYADELKIFMESRSSEDKEPVMIALQFAMLSTFRGVTKVSTMKHATRFFISPDIQEVKDFILRRGLTKDSNNNTVANISNVSREVKSEEWLKPALVKTIKEMKNSESGNYICKGTIIDFHPEESWYYESCGNDKCYKGVPKGSKIGDYCKKCKKPIGSINIRQIVGMTRLN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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