Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004514`

染色体: Chr07 坐标: 57794196-57796865 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004514`
名称	SmilChr07G004514
描述	ankyrin repeat-containing protein At5g02620-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	57794196 - 57796865 / `+`

ID 对照

NCBI Gene ID	`LOC130994493`
GeneID	`130994493`
locus_tag	`-`
NCBI Name	`LOC130994493`
原始查询	`SmilChr07G004514`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat-containing protein At5g02620-like
产物	ankyrin repeat-containing protein At5g02620-like
Arabidopsis	`AT5G02620` (ANK1) ankyrin-like1 [Source:NCBI gene (formerly Entrezgene);Acc:831855] identity=29.8; qcov=0.811; evalue=9.37e-25; confidence=low
Rice	`Os11g0182900` - identity=31.9; qcov=0.709; evalue=2.8e-21; confidence=low
GO	GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4)
InterPro	-
eggNOG	-
NR	GeneID:130994493

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057775518.1`
2	Cytosol	细胞质基质	0.20000	`XP_057775518.1`
3	Nucleus	细胞核	0.00000	`XP_057775518.1`
4	Chromosome	染色体	0.00000	`XP_057775518.1`
5	Centromere	着丝粒	0.00000	`XP_057775518.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:57794296`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B92,D11
`Chr7:57794297`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B106,B25,B92,C83,D11
`Chr7:57794358`	`CA`	`C`	1bp_deletion	frameshift_variant	64	A15,A16,A23,A6,A7,A9,B1,B10,B101,B11,B110,B111,B114,B12,B122,B127,B133,B15,B18,B23,B26,B27,B30,B33,B35,B42,B43,B44,B45,B47,B50,B51,B54,B55,B71,B72,B82,B86,B89,B95,B97,C19,C2,C21,C28,C33,C37,C44,C46,C47,C48,C49,C57,C6,C60,C61,C63,C8,C80,C82,D10,D5,D8,D9
`Chr7:57794360`	`AG`	`A`	1bp_deletion	frameshift_variant	1	C65
`Chr7:57794360`	`AG`	`A`	1bp_deletion	CDS_variant	1	C65
`Chr7:57794362`	`A`	`AC`	1bp_insertion	frameshift_variant	56	A15,A16,A23,A6,A9,B1,B10,B101,B11,B110,B111,B114,B12,B122,B128,B133,B15,B18,B23,B27,B30,B33,B35,B42,B43,B44,B45,B50,B51,B54,B55,B71,B72,B82,B86,B89,B97,C19,C2,C21,C28,C33,C37,C44,C46,C47,C48,C57,C6,C60,C63,C8,C80,D10,D5,D9
`Chr7:57794368`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B121,B25,C80,C83
`Chr7:57794417`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B34,B47
`Chr7:57794444`	`C`	`CAT`	2bp_insertion	frameshift_variant	1	C84
`Chr7:57794444`	`C`	`CAT`	2bp_insertion	CDS_variant	1	C84
`Chr7:57794471`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C84
`Chr7:57794490`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775518.1

265 aa

132

265

Ank_2

Ank

Ank_4

Ank_2

Ank

Ank_3

PF12796 Ank_2 10-95 aa PF12796 Ank_2 109-173 aa PF00023 Ank 110-130 aa PF13637 Ank_4 113-161 aa PF13637 Ank_4 146-196 aa PF12796 Ank_2 170-215 aa PF00023 Ank 175-197 aa PF13606 Ank_3 175-198 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775518.1`	Pfam	`PF12796`	Ank_2	Repeat	10	95	3.2e-26	92.4	Ankyrin repeats (3 copies)
`XP_057775518.1`	Pfam	`PF12796`	Ank_2	Repeat	109	173	3.2e-26	92.4	Ankyrin repeats (3 copies)
`XP_057775518.1`	Pfam	`PF00023`	Ank	Repeat	110	130	1.5e-20	72.9	Ankyrin repeat
`XP_057775518.1`	Pfam	`PF13637`	Ank_4	Repeat	113	161	2e-15	57.3	Ankyrin repeats (many copies)
`XP_057775518.1`	Pfam	`PF13637`	Ank_4	Repeat	146	196	2e-15	57.3	Ankyrin repeats (many copies)
`XP_057775518.1`	Pfam	`PF12796`	Ank_2	Repeat	170	215	3.2e-26	92.4	Ankyrin repeats (3 copies)
`XP_057775518.1`	Pfam	`PF00023`	Ank	Repeat	175	197	1.5e-20	72.9	Ankyrin repeat
`XP_057775518.1`	Pfam	`PF13606`	Ank_3	Repeat	175	198	3.1e-19	67.5	Ankyrin repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057919535.1
TATATATATGTGTGTGTGAGAGTTCACAAAATCACAAGCTTGTGTGGAAATTAAAAAAGGCATTAGTTGAATAGGAAATTAAGAATGGCTGGAGAATCAGCGGAAAAGAAACTGTATGATGCTGCAACAATTGGGGATGTAGCAACGTTCCAACAACTGCTCCAAGAAAACCCACATCTTCTTGATGTAGTTTCATTTCCATGTCTCAGAAATGTATTACACATAGCAATAAAGCAGGGACAAGAAAGCATCATGGAAGA...

CDS

1 records

下载 CDS FASTA

LOC130994493
ATGGCTGGAGAATCAGCGGAAAAGAAACTGTATGATGCTGCAACAATTGGGGATGTAGCAACGTTCCAACAACTGCTCCAAGAAAACCCACATCTTCTTGATGTAGTTTCATTTCCATGTCTCAGAAATGTATTACACATAGCAATAAAGCAGGGACAAGAAAGCATCATGGAAGAGGTGTTGCAGATCAACCAAGAGCTAGCTCGAGATCTGGACTCCAAGAATTCTTCATCTCTTCACCTTGCAGCTGCGAAAGGGAA...

Protein

1 records

下载 Protein FASTA

XP_057775518.1
MAGESAEKKLYDAATIGDVATFQQLLQENPHLLDVVSFPCLRNVLHIAIKQGQESIMEEVLQINQELARDLDSKNSSSLHLAAAKGNVGIAKRLLAIAPEMCWWRDCHDMNPIHVAAIKGHDEVLKELLQMDLFPAMERHRGQTVLHLCVKHRQLTTLKVLAEKLGDLVNAKDDDGETLLHLAVRSNQDQVVRYLVESNKMKKLSMNSMGKTALDILNESFRDTATYSEIKEFLRSLSDQSMLEVFPKLTDVTMVVVVLI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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