当前解析结果
SmilChr07G004522| 统一新 Gene ID | SmilChr07G004522 |
|---|---|
| 名称 | SmilChr07G004522 |
| 描述 | ankyrin repeat-containing protein At5g02620-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 57888812 - 57890896 / - |
| NCBI Gene ID | LOC130995116 |
|---|---|
| GeneID | 130995116 |
| locus_tag | - |
| NCBI Name | LOC130995116 |
| 原始查询 | SmilChr07G004522 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ankyrin repeat-containing protein At5g02620-like |
| 产物 | ankyrin repeat-containing protein At5g02620-like |
| Arabidopsis | AT5G51160 (AT5G51160)Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:835190] identity=26.1; qcov=0.838; evalue=6.37e-24; confidence=low |
| Rice | Os09g0343200- identity=26; qcov=0.953; evalue=4.82e-21; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5); PF13962 (PGG) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130995116 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057776250.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057776250.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057776250.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057776250.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057776250.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:57888914 |
T |
TG |
1bp_insertion | frameshift_variant | 4 | A3,B101,B55,D4 |
Chr7:57888914 |
T |
TG |
1bp_insertion | CDS_variant | 4 | A3,B101,B55,D4 |
Chr7:57888967 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B111,B119,B81,C44,C49 |
Chr7:57888993 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B47 |
Chr7:57888993 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B47 |
Chr7:57889008 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A24 |
Chr7:57889010 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B140,B26 |
Chr7:57889245 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr7:57889304 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | D10 |
Chr7:57889304 |
GA |
G |
1bp_deletion | CDS_variant | 1 | D10 |
Chr7:57889387 |
CTG |
C |
2bp_deletion | frameshift_variant | 4 | B43,B98,C40,C8 |
Chr7:57889387 |
CTG |
C |
2bp_deletion | CDS_variant | 4 | B43,B98,C40,C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057776250.1PF12796
Ank_2 10-95 aa
PF12796
Ank_2 100-165 aa
PF00023
Ank 108-131 aa
PF13606
Ank_3 108-131 aa
PF13637
Ank_4 147-197 aa
PF13857
Ank_5 162-218 aa
PF12796
Ank_2 171-223 aa
PF00023
Ank 176-201 aa
PF13606
Ank_3 176-204 aa
PF13962
PGG 252-357 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057776250.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 10 | 95 | 7.5e-30 | 104.1 | Ankyrin repeats (3 copies) |
XP_057776250.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 100 | 165 | 7.5e-30 | 104.1 | Ankyrin repeats (3 copies) |
XP_057776250.1 |
Pfam | PF00023 |
Ank | Repeat | 108 | 131 | 1.7e-21 | 75.8 | Ankyrin repeat |
XP_057776250.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 108 | 131 | 4.3e-22 | 76.3 | Ankyrin repeat |
XP_057776250.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 147 | 197 | 8.6e-21 | 74.3 | Ankyrin repeats (many copies) |
XP_057776250.1 |
Pfam | PF13857 |
Ank_5 | Repeat | 162 | 218 | 6.6e-17 | 62.2 | Ankyrin repeats (many copies) |
XP_057776250.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 171 | 223 | 7.5e-30 | 104.1 | Ankyrin repeats (3 copies) |
XP_057776250.1 |
Pfam | PF00023 |
Ank | Repeat | 176 | 201 | 1.7e-21 | 75.8 | Ankyrin repeat |
XP_057776250.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 176 | 204 | 4.3e-22 | 76.3 | Ankyrin repeat |
XP_057776250.1 |
Pfam | PF13962 |
PGG | Domain | 252 | 357 | 1.4e-18 | 67.4 | Domain of unknown function |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。