Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004527`

染色体: Chr07 坐标: 57918289-57920531 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004527`
名称	SmilChr07G004527
描述	ankyrin repeat-containing protein At5g02620-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	57918289 - 57920531 / `-`

ID 对照

NCBI Gene ID	`LOC130995122`
GeneID	`130995122`
locus_tag	`-`
NCBI Name	`LOC130995122`
原始查询	`SmilChr07G004527`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat-containing protein At5g02620-like
产物	ankyrin repeat-containing protein At5g02620-like
Arabidopsis	`AT5G02620` (ANK1) ankyrin-like1 [Source:NCBI gene (formerly Entrezgene);Acc:831855] identity=30.1; qcov=0.809; evalue=8.83e-20; confidence=low
Rice	`Os01g0837000` (OsNPR4) - identity=35.5; qcov=0.661; evalue=1.04e-17; confidence=low
GO	GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4)
InterPro	-
eggNOG	-
NR	GeneID:130995122

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.40000	`XP_057776254.1`
2	Cytosol	细胞质基质	0.40000	`XP_057776254.1`
3	Cell membrane	细胞膜	0.20000	`XP_057776254.1`
4	Nucleus	细胞核	0.00000	`XP_057776254.1`
5	Chromosome	染色体	0.00000	`XP_057776254.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:57918878`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A9,B63,B86,C81
`Chr7:57919846`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B3
`Chr7:57919879`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B24,B53,D3
`Chr7:57919909`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B39
`Chr7:57919930`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A22,B109,B110,B57,D3
`Chr7:57919939`	`G`	`A`	EMS_canonical_SNV	stop_gained	5	B133,B42,B46,B95,D11
`Chr7:57919939`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B133,B42,B46,B95,D11
`Chr7:57919982`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B120,B125,C35,D1
`Chr7:57919983`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr7:57920036`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B56
`Chr7:57920174`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C14,D4
`Chr7:57920177`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A8,C68

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776254.1

232 aa

116

232

Ank_2

Ank

Ank_3

Ank_2

Ank

Ank_4

PF12796 Ank_2 45-130 aa PF12796 Ank_2 114-200 aa PF00023 Ank 143-166 aa PF13606 Ank_3 143-166 aa PF12796 Ank_2 177-226 aa PF00023 Ank 179-200 aa PF13637 Ank_4 182-226 aa

XP_057776255.1

230 aa

115

230

Ank_2

Ank

Ank_3

Ank_2

Ank

Ank_4

Ank

PF12796 Ank_2 45-130 aa PF12796 Ank_2 114-200 aa PF00023 Ank 143-166 aa PF13606 Ank_3 143-166 aa PF12796 Ank_2 178-230 aa PF00023 Ank 179-200 aa PF13637 Ank_4 182-230 aa PF00023 Ank 211-230 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776254.1`	Pfam	`PF12796`	Ank_2	Repeat	45	130	7.5e-29	100.9	Ankyrin repeats (3 copies)
`XP_057776254.1`	Pfam	`PF12796`	Ank_2	Repeat	114	200	7.5e-29	100.9	Ankyrin repeats (3 copies)
`XP_057776254.1`	Pfam	`PF00023`	Ank	Repeat	143	166	1.5e-18	66.6	Ankyrin repeat
`XP_057776254.1`	Pfam	`PF13606`	Ank_3	Repeat	143	166	9.8e-19	66.0	Ankyrin repeat
`XP_057776254.1`	Pfam	`PF12796`	Ank_2	Repeat	177	226	7.5e-29	100.9	Ankyrin repeats (3 copies)
`XP_057776254.1`	Pfam	`PF00023`	Ank	Repeat	179	200	1.5e-18	66.6	Ankyrin repeat
`XP_057776254.1`	Pfam	`PF13637`	Ank_4	Repeat	182	226	2.3e-16	60.2	Ankyrin repeats (many copies)
`XP_057776255.1`	Pfam	`PF12796`	Ank_2	Repeat	45	130	1.8e-30	106.1	Ankyrin repeats (3 copies)
`XP_057776255.1`	Pfam	`PF12796`	Ank_2	Repeat	114	200	1.8e-30	106.1	Ankyrin repeats (3 copies)
`XP_057776255.1`	Pfam	`PF00023`	Ank	Repeat	143	166	5.7e-20	71.0	Ankyrin repeat
`XP_057776255.1`	Pfam	`PF13606`	Ank_3	Repeat	143	166	7.8e-20	69.4	Ankyrin repeat
`XP_057776255.1`	Pfam	`PF12796`	Ank_2	Repeat	178	230	1.8e-30	106.1	Ankyrin repeats (3 copies)
`XP_057776255.1`	Pfam	`PF00023`	Ank	Repeat	179	200	5.7e-20	71.0	Ankyrin repeat
`XP_057776255.1`	Pfam	`PF13637`	Ank_4	Repeat	182	230	9.6e-18	64.6	Ankyrin repeats (many copies)
`XP_057776255.1`	Pfam	`PF00023`	Ank	Repeat	211	230	5.7e-20	71.0	Ankyrin repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057920271.1
AATTCTCTTAATGACCACTTTAAAAAATTGTCTTTATATAAACATCTCCAGAATTCTTGACTGTCTCAACACCATCAACAACATAATCAAGAAATTAATATTCACATATCAAGCAATGGTTCGAGAAGTAATTAGAAAAAAGCTTTACGATGCAGCAACACAAGGTGATGCAACAACGTTTCAAGAACTACTCCAAGAAGATCCATATCTTCTCGATGTAGTTTCGTTTCCCGATTCGAGAAATCTTCTCCACATAGCAA...

XM_057920272.1
AATTCTCTTAATGACCACTTTAAAAAATTGTCTTTATATAAACATCTCCAGAATTCTTGACTGTCTCAACACCATCAACAACATAATCAAGAAATTAATATTCACATATCAAGCAATGGTTCGAGAAGTAATTAGAAAAAAGCTTTACGATGCAGCAACACAAGGTGATGCAACAACGTTTCAAGAACTACTCCAAGAAGATCCATATCTTCTCGATGTAGTTTCGTTTCCCGATTCGAGAAATCTTCTCCACATAGCAA...

CDS

2 records

下载 CDS FASTA

LOC130995122
ATGACCACTTTAAAAAATTGTCTTTATATAAACATCTCCAGAATTCTTGACTGTCTCAACACCATCAACAACATAATCAAGAAATTAATATTCACATATCAAGCAATGGTTCGAGAAGTAATTAGAAAAAAGCTTTACGATGCAGCAACACAAGGTGATGCAACAACGTTTCAAGAACTACTCCAAGAAGATCCATATCTTCTCGATGTAGTTTCGTTTCCCGATTCGAGAAATCTTCTCCACATAGCAACAAGAAGCGG...

Protein

2 records

下载 Protein FASTA

XP_057776254.1
MTTLKNCLYINISRILDCLNTINNIIKKLIFTYQAMVREVIRKKLYDAATQGDATTFQELLQEDPYLLDVVSFPDSRNLLHIATRSGQASIVEEILRINQHLAWSLDSQKSSSLHIAAAKGTVEIASKLLAIAPQTCWLRDCHGMNPVHIAAMNGHVEILEEFIRHDRLPATEKVDHRQTVLHLCVKHGQLRVLQVLVNHFRELVHLQDDYGETVLHLAVRYKQVEFEQAVD

XP_057776255.1
MTTLKNCLYINISRILDCLNTINNIIKKLIFTYQAMVREVIRKKLYDAATQGDATTFQELLQEDPYLLDVVSFPDSRNLLHIATRSGQASIVEEILRINQHLAWSLDSQKSSSLHIAAAKGTVEIASKLLAIAPQTCWLRDCHGMNPVHIAAMNGHVEILEEFIRHDRLPATEKVDHRQTVLHLCVKHGQLRVLQVLVNHFRELVHLQDDYGETVLHLAVRYKQVEIVRY

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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