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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G004528

染色体: Chr07 坐标: 57933860-57935998 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G004528
名称SmilChr07G004528
描述ankyrin repeat-containing protein At5g02620-like
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向57933860 - 57935998 / -

ID 对照

NCBI Gene IDLOC130995121
GeneID130995121
locus_tag-
NCBI NameLOC130995121
原始查询SmilChr07G004528

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述ankyrin repeat-containing protein At5g02620-like
产物ankyrin repeat-containing protein At5g02620-like
ArabidopsisAT5G02620 (ANK1)
ankyrin-like1 [Source:NCBI gene (formerly Entrezgene);Acc:831855]
identity=29; qcov=0.817; evalue=3.6e-18; confidence=low
RiceOs01g0837000 (OsNPR4)
-
identity=35.8; qcov=0.661; evalue=1.34e-17; confidence=low
GOGO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304)
KEGG-
PfamPF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5); PF13962 (PGG)
InterPro-
eggNOG-
NRGeneID:130995121

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057776252.1
2 Cytosol 细胞质基质 0.80000 XP_057776253.1
3 Cytoplasm 细胞质 0.20000 XP_057776253.1
4 Nucleus 细胞核 0.00000 XP_057776252.1
5 Chromosome 染色体 0.00000 XP_057776252.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:57934032 G A EMS_canonical_SNV CDS_variant 1 C59
Chr7:57934151 G A EMS_canonical_SNV CDS_variant 3 A20,B60,D9
Chr7:57934254 AC A 1bp_deletion frameshift_variant 19 A24,B114,B12,B16,B17,B45,B53,B64,B80,B81,B93,B94,C33,C39,C46,C62,D11,D2,D6
Chr7:57934311 G A EMS_canonical_SNV CDS_variant 1 B20
Chr7:57934350 C T EMS_canonical_SNV CDS_variant 4 A9,B63,B86,C81
Chr7:57934422 C T EMS_canonical_SNV CDS_variant 1 C85
Chr7:57934497 C T EMS_canonical_SNV CDS_variant 1 C62
Chr7:57934539 G A EMS_canonical_SNV CDS_variant 1 B113
Chr7:57934549 CT C 1bp_deletion frameshift_variant 1 B113
Chr7:57934549 CT C 1bp_deletion CDS_variant 1 B113
Chr7:57934557 G A EMS_canonical_SNV CDS_variant 1 B56
Chr7:57935341 G A EMS_canonical_SNV CDS_variant 5 B132,B35,B56,B7,C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776252.1
402 aa
N
1
201
402
Ank_2
Ank_2
Ank
Ank_3
Ank_2
Ank_4
Ank_5
Ank_2
Ank
Ank_3
PGG
C
PF12796 Ank_2 11-95 aa PF12796 Ank_2 79-165 aa PF00023 Ank 108-131 aa PF13606 Ank_3 108-131 aa PF12796 Ank_2 114-204 aa PF13637 Ank_4 147-197 aa PF13857 Ank_5 162-218 aa PF12796 Ank_2 171-219 aa PF00023 Ank 176-201 aa PF13606 Ank_3 176-204 aa PF13962 PGG 257-353 aa
XP_057776253.1
224 aa
N
1
112
224
Ank_2
Ank_2
Ank
Ank_3
Ank_2
Ank
Ank_4
C
PF12796 Ank_2 10-95 aa PF12796 Ank_2 100-165 aa PF00023 Ank 108-131 aa PF13606 Ank_3 108-131 aa PF12796 Ank_2 114-191 aa PF00023 Ank 144-165 aa PF13637 Ank_4 147-190 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057776252.1 Pfam PF12796 Ank_2 Repeat 11 95 3.4e-42 143.6 Ankyrin repeats (3 copies)
XP_057776252.1 Pfam PF12796 Ank_2 Repeat 79 165 3.4e-42 143.6 Ankyrin repeats (3 copies)
XP_057776252.1 Pfam PF00023 Ank Repeat 108 131 7.2e-22 77.0 Ankyrin repeat
XP_057776252.1 Pfam PF13606 Ank_3 Repeat 108 131 1.6e-22 77.6 Ankyrin repeat
XP_057776252.1 Pfam PF12796 Ank_2 Repeat 114 204 3.4e-42 143.6 Ankyrin repeats (3 copies)
XP_057776252.1 Pfam PF13637 Ank_4 Repeat 147 197 1.5e-19 70.3 Ankyrin repeats (many copies)
XP_057776252.1 Pfam PF13857 Ank_5 Repeat 162 218 5.6e-18 65.6 Ankyrin repeats (many copies)
XP_057776252.1 Pfam PF12796 Ank_2 Repeat 171 219 3.4e-42 143.6 Ankyrin repeats (3 copies)
XP_057776252.1 Pfam PF00023 Ank Repeat 176 201 7.2e-22 77.0 Ankyrin repeat
XP_057776252.1 Pfam PF13606 Ank_3 Repeat 176 204 1.6e-22 77.6 Ankyrin repeat
XP_057776252.1 Pfam PF13962 PGG Domain 257 353 1.3e-17 64.4 Domain of unknown function
XP_057776253.1 Pfam PF12796 Ank_2 Repeat 10 95 7.6e-29 100.8 Ankyrin repeats (3 copies)
XP_057776253.1 Pfam PF12796 Ank_2 Repeat 100 165 7.6e-29 100.8 Ankyrin repeats (3 copies)
XP_057776253.1 Pfam PF00023 Ank Repeat 108 131 7.5e-19 67.5 Ankyrin repeat
XP_057776253.1 Pfam PF13606 Ank_3 Repeat 108 131 1.9e-19 68.2 Ankyrin repeat
XP_057776253.1 Pfam PF12796 Ank_2 Repeat 114 191 7.6e-29 100.8 Ankyrin repeats (3 copies)
XP_057776253.1 Pfam PF00023 Ank Repeat 144 165 7.5e-19 67.5 Ankyrin repeat
XP_057776253.1 Pfam PF13637 Ank_4 Repeat 147 190 5.9e-17 62.1 Ankyrin repeats (many copies)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057920270.1
CTTTAAAAAATTGTCTTTATATAAACATCTCCAGAATTATTGACTGTCTCAACACCATCAACAACATAATCAAGAAATTAATATTCACAATCAGGCAATGGTTCGAGAAGTAATTAGAAAAAAGCTTTACGATGCAGCAACGCTAGGTGATGCAACAACGTTTCAAGAACAACTCCAAGAAGATCCATATCTTCTCGATGTAGTTTCATTTCCCGATTCAAGAAATCTCCTCCACATAGCAACAAGAAGCGGACAAGCAT...
XM_057920269.1
CTTTAAAAAATTGTCTTTATATAAACATCTCCAGAATTATTGACTGTCTCAACACCATCAACAACATAATCAAGAAATTAATATTCACAATCAGGCAATGGTTCGAGAAGTAATTAGAAAAAAGCTTTACGATGCAGCAACGCTAGGTGATGCAACAACGTTTCAAGAACAACTCCAAGAAGATCCATATCTTCTCGATGTAGTTTCATTTCCCGATTCAAGAAATCTCCTCCACATAGCAACAAGAAGCGGACAAGCAT...

CDS

2 records

下载 CDS FASTA
LOC130995121
ATGGTTCGAGAAGTAATTAGAAAAAAGCTTTACGATGCAGCAACGCTAGGTGATGCAACAACGTTTCAAGAACAACTCCAAGAAGATCCATATCTTCTCGATGTAGTTTCATTTCCCGATTCAAGAAATCTCCTCCACATAGCAACAAGAAGCGGACAAGCATCCATTGTCGAGGAGATATTAAGGATCAACCAACATCTAGCCTGGAGTTTGGACTCCCAAAAGTCGTCGCCTCTTCACATCGCAGCAGCAAAAGGGAC...
LOC130995121
ATGGTTCGAGAAGTAATTAGAAAAAAGCTTTACGATGCAGCAACGCTAGGTGATGCAACAACGTTTCAAGAACAACTCCAAGAAGATCCATATCTTCTCGATGTAGTTTCATTTCCCGATTCAAGAAATCTCCTCCACATAGCAACAAGAAGCGGACAAGCATCCATTGTCGAGGAGATATTAAGGATCAACCAACATCTAGCCTGGAGTTTGGACTCCCAAAAGTCGTCGCCTCTTCACATCGCAGCAGCAAAAGGGAC...

Protein

2 records

下载 Protein FASTA
XP_057776252.1
MVREVIRKKLYDAATLGDATTFQEQLQEDPYLLDVVSFPDSRNLLHIATRSGQASIVEEILRINQHLAWSLDSQKSSPLHIAAAKGTVEIASKLLAIAPQTCWLRDCHGMNPVHIAAMNGHVEILEEFIRHDRLPATEKVDHRQTVLHLCVKHGQLRVLQVLVNHFRELVHLQDDYGETVLHLAVRYKQVEIVRYLVENTGVEYQCSRNSNRETALDISRQSPQDTIQSEIRKILEQITTIKFSINKVPIEVVLGILALI...
XP_057776253.1
MVREVIRKKLYDAATLGDATTFQEQLQEDPYLLDVVSFPDSRNLLHIATRSGQASIVEEILRINQHLAWSLDSQKSSPLHIAAAKGTVEIASKLLAIAPQTCWLRDCHGMNPVHIAAMNGHVEILEEFIRHDRLPATEKVDHRQTVLHLCVKHGQLRVLQVLVNHFRELVHLQDDYGETVLHLAVRYKQVEKTLELNINVQGIPIEKQLWTSPAKAPKTQFNLR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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