Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004532`

染色体: Chr07 坐标: 57976176-57981546 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004532`
名称	SmilChr07G004532
描述	ankyrin repeat-containing protein NPR4-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	57976176 - 57981546 / `+`

ID 对照

NCBI Gene ID	`LOC130995127`
GeneID	`130995127`
locus_tag	`-`
NCBI Name	`LOC130995127`
原始查询	`SmilChr07G004532`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat-containing protein NPR4-like
产物	ankyrin repeat-containing protein NPR4-like
Arabidopsis	`AT4G10720` (AT4G10720) Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:826666] identity=26.4; qcov=0.958; evalue=6.8e-32; confidence=low
Rice	`Os11g0182900` - identity=27.7; qcov=0.833; evalue=5.11e-29; confidence=low
GO	GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13962 (PGG)
InterPro	-
eggNOG	-
NR	GeneID:130995127

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057776260.1`
2	Nucleus	细胞核	0.00000	`XP_057776260.1`
3	Chromosome	染色体	0.00000	`XP_057776260.1`
4	Centromere	着丝粒	0.00000	`XP_057776260.1`
5	Chromatin	染色质	0.00000	`XP_057776260.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:57976323`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B8,C30
`Chr7:57976329`	`CA`	`C`	1bp_deletion	frameshift_variant	18	B110,B114,B18,B23,B33,B43,B66,C13,C16,C19,C35,C44,C48,C5,C7,C80,D1,D8
`Chr7:57976339`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B106,B121,B82,C21,C80
`Chr7:57976341`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B98
`Chr7:57976461`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B118,B91,C85,D5
`Chr7:57976463`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A6,C44
`Chr7:57976464`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B103,C28,D4
`Chr7:57976656`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C84
`Chr7:57976661`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr7:57976699`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B18,C57
`Chr7:57976715`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A8,B32,B93
`Chr7:57976749`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776260.1

450 aa

225

450

Ank_2

Ank

Ank_4

Ank

Ank_2

Ank

Ank_3

PGG

PF12796 Ank_2 10-95 aa PF12796 Ank_2 109-174 aa PF00023 Ank 110-130 aa PF13637 Ank_4 113-163 aa PF00023 Ank 143-175 aa PF12796 Ank_2 171-217 aa PF00023 Ank 176-198 aa PF13606 Ank_3 176-199 aa PF13962 PGG 250-356 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776260.1`	Pfam	`PF12796`	Ank_2	Repeat	10	95	8.8e-28	97.4	Ankyrin repeats (3 copies)
`XP_057776260.1`	Pfam	`PF12796`	Ank_2	Repeat	109	174	8.8e-28	97.4	Ankyrin repeats (3 copies)
`XP_057776260.1`	Pfam	`PF00023`	Ank	Repeat	110	130	1.2e-21	76.2	Ankyrin repeat
`XP_057776260.1`	Pfam	`PF13637`	Ank_4	Repeat	113	163	2.5e-16	60.1	Ankyrin repeats (many copies)
`XP_057776260.1`	Pfam	`PF00023`	Ank	Repeat	143	175	1.2e-21	76.2	Ankyrin repeat
`XP_057776260.1`	Pfam	`PF12796`	Ank_2	Repeat	171	217	8.8e-28	97.4	Ankyrin repeats (3 copies)
`XP_057776260.1`	Pfam	`PF00023`	Ank	Repeat	176	198	1.2e-21	76.2	Ankyrin repeat
`XP_057776260.1`	Pfam	`PF13606`	Ank_3	Repeat	176	199	1.6e-19	68.4	Ankyrin repeat
`XP_057776260.1`	Pfam	`PF13962`	PGG	Domain	250	356	5.6e-23	81.7	Domain of unknown function

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057920277.1
GTGTGTGTGAGAGTTCACAAAATCACAAGCTTGTGTGGAAATTAAAAAAGGCATTAGTTGAATAGGAAATCAAGAATGGCTGGAGAATCAGCGGAAAAGAAACTGTATGATGCTGCAACAATTGGGGATGTAGCAACGTTCCAACAACTGCTCCAAGAAAACCCACATCTTCTTGATGTAGTTTCATTTCCATGTCTCAGAAATGTATTACACATAGCAATAAAGCAGGGACAAGAAAGCATCATGGAAGAGGTGTTGCA...

CDS

1 records

下载 CDS FASTA

LOC130995127
ATGGCTGGAGAATCAGCGGAAAAGAAACTGTATGATGCTGCAACAATTGGGGATGTAGCAACGTTCCAACAACTGCTCCAAGAAAACCCACATCTTCTTGATGTAGTTTCATTTCCATGTCTCAGAAATGTATTACACATAGCAATAAAGCAGGGACAAGAAAGCATCATGGAAGAGGTGTTGCAGATCAACCAAGAGCTAGCTCGAGATCTGGACTCCAAGAATTCTTCATCTCTTCACCTTGCAGCTGCGAAAGGGAA...

Protein

1 records

下载 Protein FASTA

XP_057776260.1
MAGESAEKKLYDAATIGDVATFQQLLQENPHLLDVVSFPCLRNVLHIAIKQGQESIMEEVLQINQELARDLDSKNSSSLHLAAAKGNVGIAKRLLPIAPEMCWWRDCHDMNPIHVAAMKGHDEVLKELLQMDLFPAMERLHRGQTALHFCVKHRQLTTLKVLVEKLGDLVNAKDDDGETLLHLAVRSNQDEVVRYLVESNKMKKLSMNSMGKTALHILNETSRDTATYSEIKGMLRSLSDQSMLEVFPKLTDVTMVVVVL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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