当前解析结果
SmilChr07G004533| 统一新 Gene ID | SmilChr07G004533 |
|---|---|
| 名称 | SmilChr07G004533 |
| 描述 | late blight resistance protein R1-A-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 57986516 - 57989224 / + |
| NCBI Gene ID | LOC130994498 |
|---|---|
| GeneID | 130994498 |
| locus_tag | - |
| NCBI Name | LOC130994498 |
| 原始查询 | SmilChr07G004533 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | late blight resistance protein R1-A-like |
| 产物 | late blight resistance protein R1-A-like |
| Arabidopsis | AT1G53350 (AT1G53350)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=26.6; qcov=0.981; evalue=1.67e-66; confidence=low |
| Rice | Os07g0186500- identity=27.4; qcov=0.94; evalue=1.98e-67; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994498 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057775525.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057775525.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057775525.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057775525.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057775525.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:57986522 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B138,C85 |
Chr7:57986523 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr7:57986532 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C11,C19 |
Chr7:57986606 |
C |
T |
EMS_canonical_SNV | stop_gained | 12 | A19,A24,B11,B21,B42,B43,B71,B94,C21,C51,C7,D1 |
Chr7:57986624 |
GA |
G |
1bp_deletion | frameshift_variant | 5 | B129,B60,B68,C55,D5 |
Chr7:57986624 |
GA |
G |
1bp_deletion | CDS_variant | 5 | B129,B60,B68,C55,D5 |
Chr7:57986644 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr7:57986697 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A2,B71 |
Chr7:57986701 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B98,C58 |
Chr7:57986706 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,B18,C57 |
Chr7:57986989 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr7:57987004 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775525.1PF00931
NB-ARC 161-322 aa
PF23559
WHD_DRP 408-478 aa
PF23598
LRR_14 526-858 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775525.1 |
Pfam | PF00931 |
NB-ARC | Domain | 161 | 322 | 2.6e-37 | 128.8 | NB-ARC domain |
XP_057775525.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 408 | 478 | 9.5e-16 | 58.3 | Disease resistance protein Winged helix domain |
XP_057775525.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 526 | 858 | 3e-12 | 46.7 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。