当前解析结果
SmilChr07G004539| 统一新 Gene ID | SmilChr07G004539 |
|---|---|
| 名称 | SmilChr07G004539 |
| 描述 | uncharacterized SmilChr07G004539 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 58034090 - 58041045 / + |
| NCBI Gene ID | LOC130994501 |
|---|---|
| GeneID | 130994501 |
| locus_tag | - |
| NCBI Name | LOC130994501 |
| 原始查询 | SmilChr07G004539 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771]; symbol=AT1G53350; hit=AT1G53350; species=arabidopsis; confidence=low |
| 产物 | Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771]; symbol=AT1G53350; hit=AT1G53350; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G53350 (AT1G53350)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=25.9; qcov=0.49; evalue=5.9e-71; confidence=low |
| Rice | Os07g0186500- identity=30.4; qcov=0.387; evalue=9.3e-69; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994501 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057775527.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057775527.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057775527.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057775527.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057775527.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:58034286 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B92,B93 |
Chr7:58034287 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B106,C8 |
Chr7:58034490 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B15,B41 |
Chr7:58034495 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr7:58034534 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A9 |
Chr7:58034572 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B128,C27 |
Chr7:58034651 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B73,C45,C59 |
Chr7:58034752 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A8 |
Chr7:58034915 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B128,B66,B90,B92 |
Chr7:58034935 |
AG |
A |
1bp_deletion | frameshift_variant | 14 | A22,B105,B23,B28,B42,B43,B6,B88,B91,B95,C11,C57,C67,C69 |
Chr7:58034999 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
Chr7:58035000 |
T |
TGC |
2bp_insertion | frameshift_variant | 1 | C19 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775527.1PF00931
NB-ARC 176-337 aa
PF23559
WHD_DRP 423-494 aa
PF00931
NB-ARC 1144-1307 aa
PF23559
WHD_DRP 1393-1464 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775527.1 |
Pfam | PF00931 |
NB-ARC | Domain | 176 | 337 | 6.9e-82 | 273.9 | NB-ARC domain |
XP_057775527.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 423 | 494 | 1.9e-34 | 118.2 | Disease resistance protein Winged helix domain |
XP_057775527.1 |
Pfam | PF00931 |
NB-ARC | Domain | 1144 | 1307 | 6.9e-82 | 273.9 | NB-ARC domain |
XP_057775527.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 1393 | 1464 | 1.9e-34 | 118.2 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。