当前解析结果
SmilChr07G004540| 统一新 Gene ID | SmilChr07G004540 |
|---|---|
| 名称 | SmilChr07G004540 |
| 描述 | secreted RxLR effector protein 161-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 58054939 - 58055463 / - |
| NCBI Gene ID | LOC130994502 |
|---|---|
| GeneID | 130994502 |
| locus_tag | - |
| NCBI Name | LOC130994502 |
| 原始查询 | SmilChr07G004540 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | secreted RxLR effector protein 161-like |
| 产物 | secreted RxLR effector protein 161-like |
| Arabidopsis | AT4G23160 (CRK8)cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415] identity=39.5; qcov=0.931; evalue=2.71e-26; confidence=medium |
| Rice | Os11g0656500- identity=43.9; qcov=0.943; evalue=1.22e-34; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994502 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057775528.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057775528.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057775528.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057775528.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057775528.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:58054999 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B134,B33 |
Chr7:58055052 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr7:58055086 |
CT |
C |
1bp_deletion | frameshift_variant | 3 | B119,B61,D1 |
Chr7:58055086 |
CT |
C |
1bp_deletion | CDS_variant | 3 | B119,B61,D1 |
Chr7:58055104 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A8,B26,B7,B88 |
Chr7:58055114 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A3,B59,B91,C8,D10 |
Chr7:58055132 |
A |
AT |
1bp_insertion | frameshift_variant | 29 | A11,A18,A3,A4,B111,B133,B134,B14,B23,B24,B29,B39,B41,B59,B65,B79,B82,B91,C1,C3,C32,C39,C68,C71,C76,C78,C8,C87,D9 |
Chr7:58055133 |
TCC |
T |
2bp_deletion | frameshift_variant | 3 | B134,B33,B65 |
Chr7:58055133 |
TCC |
T |
2bp_deletion | CDS_variant | 3 | B134,B33,B65 |
Chr7:58055139 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | D10 |
Chr7:58055139 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:58055147 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B122,D10,D3 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。