Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004541`

染色体: Chr07 坐标: 58093956-58096106 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004541`
名称	SmilChr07G004541
描述	uncharacterized SmilChr07G004541
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	58093956 - 58096106 / `+`

ID 对照

NCBI Gene ID	`LOC130994503`
GeneID	`130994503`
locus_tag	`-`
NCBI Name	`LOC130994503`
原始查询	`SmilChr07G004541`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=medium
产物	TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509]; symbol=AT1G19260; hit=AT1G19260; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G19260` (AT1G19260) TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838509] identity=38.7; qcov=0.989; evalue=9.13e-168; confidence=medium
Rice	`Os02g0301400` - identity=34; qcov=0.55; evalue=2.4e-77; confidence=low
GO	GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF05699 (Dimer_Tnp_hAT); PF14291 (DUF4371); PF27073 (FAM200-ZBED5_RNase-like)
InterPro	-
eggNOG	-
NR	GeneID:130994503

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057775529.1`
2	Cytoplasm	细胞质	0.80000	`XP_057775529.1`
3	Chromosome	染色体	0.00000	`XP_057775529.1`
4	Centromere	着丝粒	0.00000	`XP_057775529.1`
5	Chromatin	染色质	0.00000	`XP_057775529.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:58093959`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A21,C26
`Chr7:58094923`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B39,B76
`Chr7:58094925`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B39,B76
`Chr7:58094981`	`TA`	`T`	1bp_deletion	frameshift_variant	1	B51
`Chr7:58094981`	`TA`	`T`	1bp_deletion	CDS_variant	1	B51
`Chr7:58095023`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B52
`Chr7:58095025`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B58
`Chr7:58095027`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B52
`Chr7:58095039`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C13
`Chr7:58095115`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C58
`Chr7:58095513`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A4,B124,B16
`Chr7:58095951`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A2,B66

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775529.1

716 aa

358

716

DUF4371

FAM200-ZBED5_RNase-like

Dimer_Tnp_hAT

PF14291 DUF4371 55-295 aa PF27073 FAM200-ZBED5_RNase-like 188-298 aa PF05699 Dimer_Tnp_hAT 602-691 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775529.1`	Pfam	`PF14291`	DUF4371	Domain	55	295	7.1e-83	278.5	ZMYM1/FAM200, RNase-like domain
`XP_057775529.1`	Pfam	`PF27073`	FAM200-ZBED5_RNase-like	Domain	188	298	4.5e-12	46.7	FAM200/ZBED5 RNase-like
`XP_057775529.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	602	691	2e-09	37.9	hAT family C-terminal dimerisation region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057919546.1
ATGGAAGCGTATCCTGTTACAAAGTTTGGCACTCAAAATCGTAGCTTTCAGAAGAGATGGTTTGATAAGTTTCATTGGCTGGAGTATTCGCTTTCCACAAATAAGGCATATTGTTTCTATTGCTTTCTTTTCATCAGTGAAGTTAATCTGCCTGGCTCTTCTGCATTAGTCAAGGAAGGATTTGACAATTGGAAAAGAATAAATCAAGGAAAAAATTGTGCATTCCTTACTCATGTTGGTTCTGCAGCTACATCACCACA...

CDS

1 records

下载 CDS FASTA

LOC130994503
ATGGAAGCGTATCCTGTTACAAAGTTTGGCACTCAAAATCGTAGCTTTCAGAAGAGATGGTTTGATAAGTTTCATTGGCTGGAGTATTCGCTTTCCACAAATAAGGCATATTGTTTCTATTGCTTTCTTTTCATCAGTGAAGTTAATCTGCCTGGCTCTTCTGCATTAGTCAAGGAAGGATTTGACAATTGGAAAAGAATAAATCAAGGAAAAAATTGTGCATTCCTTACTCATGTTGGTTCTGCAGCTACATCACCACA...

Protein

1 records

下载 Protein FASTA

XP_057775529.1
MEAYPVTKFGTQNRSFQKRWFDKFHWLEYSLSTNKAYCFYCFLFISEVNLPGSSALVKEGFDNWKRINQGKNCAFLTHVGSAATSPHTMCLRRAEDLMRPVGHIDKVMHSQTIIEKERNRLRLKTSITSLRWLALQGCAFRGHDESSSSSNRGNFIELVKAFANMNKEVNEVVLDNAPKNAQYIAPEIQKELLNIMANRVRQMIREEVGDKYFCILVDEAQDISKQEQMAIILRFVNDHGILTERFFAIKSVSDTTSLTL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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