当前解析结果
SmilChr07G004561| 统一新 Gene ID | SmilChr07G004561 |
|---|---|
| 名称 | SmilChr07G004561 |
| 描述 | ankyrin repeat-containing protein At5g02620-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 58432868 - 58433371 / - |
| NCBI Gene ID | LOC130994508 |
|---|---|
| GeneID | 130994508 |
| locus_tag | - |
| NCBI Name | LOC130994508 |
| 原始查询 | SmilChr07G004561 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ankyrin repeat-containing protein At5g02620-like |
| 产物 | ankyrin repeat-containing protein At5g02620-like |
| Arabidopsis | AT3G09550 (AT3G09550)Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:820112] identity=33.6; qcov=0.766; evalue=5.66e-13; confidence=low |
| Rice | Os09g0334900- identity=31.7; qcov=0.719; evalue=7.5e-12; confidence=low |
| GO | GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994508 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057775534.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057775534.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057775534.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057775534.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057775534.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:58432873 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B34,C50 |
Chr7:58432883 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B22,B67,B91,C14,C20 |
Chr7:58432907 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B28,B60,C57 |
Chr7:58432960 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A1,B91,C3 |
Chr7:58432976 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A13,B2,B35,B7,C11 |
Chr7:58433011 |
GC |
G |
1bp_deletion | frameshift_variant | 2 | B103,C18 |
Chr7:58433011 |
GC |
G |
1bp_deletion | CDS_variant | 2 | B103,C18 |
Chr7:58433016 |
TTC |
T |
2bp_deletion | frameshift_variant | 3 | C28,C67,C77 |
Chr7:58433016 |
TTC |
T |
2bp_deletion | CDS_variant | 3 | C28,C67,C77 |
Chr7:58433028 |
A |
AT |
1bp_insertion | frameshift_variant | 3 | C28,C67,C77 |
Chr7:58433028 |
A |
AT |
1bp_insertion | CDS_variant | 3 | C28,C67,C77 |
Chr7:58433037 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775534.1PF12796
Ank_2 10-95 aa
PF12796
Ank_2 79-159 aa
PF00023
Ank 108-131 aa
PF13606
Ank_3 108-131 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775534.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 10 | 95 | 2.6e-17 | 63.9 | Ankyrin repeats (3 copies) |
XP_057775534.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 79 | 159 | 2.6e-17 | 63.9 | Ankyrin repeats (3 copies) |
XP_057775534.1 |
Pfam | PF00023 |
Ank | Repeat | 108 | 131 | 8.9e-12 | 45.3 | Ankyrin repeat |
XP_057775534.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 108 | 131 | 4.2e-11 | 42.6 | Ankyrin repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。