Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004567`

染色体: Chr07 坐标: 58464643-58468720 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004567`
名称	SmilChr07G004567
描述	ankyrin repeat-containing protein At5g02620-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	58464643 - 58468720 / `-`

ID 对照

NCBI Gene ID	`LOC130995149`
GeneID	`130995149`
locus_tag	`-`
NCBI Name	`LOC130995149`
原始查询	`SmilChr07G004567`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat-containing protein At5g02620-like
产物	ankyrin repeat-containing protein At5g02620-like
Arabidopsis	`AT5G51160` (AT5G51160) Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:835190] identity=25.4; qcov=0.829; evalue=6.38e-25; confidence=low
Rice	`Os11g0182900` - identity=26.8; qcov=0.891; evalue=4.36e-26; confidence=low
GO	GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13962 (PGG)
InterPro	-
eggNOG	-
NR	GeneID:130995149

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057776284.1`
2	Nucleus	细胞核	0.00000	`XP_057776284.1`
3	Chromosome	染色体	0.00000	`XP_057776284.1`
4	Centromere	着丝粒	0.00000	`XP_057776284.1`
5	Chromatin	染色质	0.00000	`XP_057776284.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:58464732`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr7:58464778`	`C`	`CG`	1bp_insertion	frameshift_variant	15	A20,A7,B124,B134,B45,B68,B76,B8,C2,C23,C31,C33,C39,C60,D6
`Chr7:58464804`	`GTT`	`G`	2bp_deletion	frameshift_variant	2	D10,D11
`Chr7:58464804`	`GTT`	`G`	2bp_deletion	CDS_variant	2	D10,D11
`Chr7:58464837`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	D10,D11
`Chr7:58464837`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr7:58464841`	`ACC`	`A`	2bp_deletion	frameshift_variant	20	A20,A9,B103,B114,B132,B20,B21,B24,B43,B71,B77,B79,B8,B95,C1,C4,C57,C81,C9,D8
`Chr7:58464844`	`A`	`AAC`	2bp_insertion	frameshift_variant	20	A20,A9,B103,B114,B132,B20,B21,B24,B43,B71,B77,B79,B8,B95,C1,C4,C57,C81,C9,D8
`Chr7:58464865`	`AAG`	`A`	2bp_deletion	frameshift_variant	26	A20,A9,B103,B114,B132,B18,B20,B21,B24,B43,B6,B71,B77,B79,B8,B84,B95,C1,C33,C4,C57,C60,C78,C81,C9,D8
`Chr7:58464868`	`G`	`GAT`	2bp_insertion	frameshift_variant	26	A20,A9,B103,B114,B132,B18,B20,B21,B24,B43,B6,B71,B77,B79,B8,B84,B95,C1,C33,C4,C57,C60,C78,C81,C9,D8
`Chr7:58464873`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,B111,B83,C59
`Chr7:58464877`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B120,B125,C49,C71,D1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776284.1

418 aa

209

418

Ank_2

Ank_4

Ank

Ank_3

PGG

PF12796 Ank_2 16-102 aa PF12796 Ank_2 114-176 aa PF13637 Ank_4 119-169 aa PF00023 Ank 148-170 aa PF13606 Ank_3 148-172 aa PF13962 PGG 227-334 aa

XP_057776285.1

418 aa

209

418

Ank_2

Ank_4

Ank

Ank_3

PGG

PF12796 Ank_2 16-102 aa PF12796 Ank_2 114-176 aa PF13637 Ank_4 119-169 aa PF00023 Ank 148-170 aa PF13606 Ank_3 148-172 aa PF13962 PGG 227-334 aa

XP_057776286.1

414 aa

207

414

Ank_2

Ank_4

Ank

Ank_3

PGG

PF12796 Ank_2 12-98 aa PF12796 Ank_2 110-172 aa PF13637 Ank_4 115-165 aa PF00023 Ank 144-166 aa PF13606 Ank_3 144-168 aa PF13962 PGG 223-330 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776284.1`	Pfam	`PF12796`	Ank_2	Repeat	16	102	8e-23	81.6	Ankyrin repeats (3 copies)
`XP_057776284.1`	Pfam	`PF12796`	Ank_2	Repeat	114	176	8e-23	81.6	Ankyrin repeats (3 copies)
`XP_057776284.1`	Pfam	`PF13637`	Ank_4	Repeat	119	169	8.9e-20	71.0	Ankyrin repeats (many copies)
`XP_057776284.1`	Pfam	`PF00023`	Ank	Repeat	148	170	2.4e-16	59.6	Ankyrin repeat
`XP_057776284.1`	Pfam	`PF13606`	Ank_3	Repeat	148	172	6.6e-17	60.4	Ankyrin repeat
`XP_057776284.1`	Pfam	`PF13962`	PGG	Domain	227	334	3e-24	85.8	Domain of unknown function
`XP_057776285.1`	Pfam	`PF12796`	Ank_2	Repeat	16	102	8e-23	81.6	Ankyrin repeats (3 copies)
`XP_057776285.1`	Pfam	`PF12796`	Ank_2	Repeat	114	176	8e-23	81.6	Ankyrin repeats (3 copies)
`XP_057776285.1`	Pfam	`PF13637`	Ank_4	Repeat	119	169	8.9e-20	71.0	Ankyrin repeats (many copies)
`XP_057776285.1`	Pfam	`PF00023`	Ank	Repeat	148	170	2.4e-16	59.6	Ankyrin repeat
`XP_057776285.1`	Pfam	`PF13606`	Ank_3	Repeat	148	172	6.6e-17	60.4	Ankyrin repeat
`XP_057776285.1`	Pfam	`PF13962`	PGG	Domain	227	334	3e-24	85.8	Domain of unknown function
`XP_057776286.1`	Pfam	`PF12796`	Ank_2	Repeat	12	98	7.8e-23	81.6	Ankyrin repeats (3 copies)
`XP_057776286.1`	Pfam	`PF12796`	Ank_2	Repeat	110	172	7.8e-23	81.6	Ankyrin repeats (3 copies)
`XP_057776286.1`	Pfam	`PF13637`	Ank_4	Repeat	115	165	8.3e-20	71.1	Ankyrin repeats (many copies)
`XP_057776286.1`	Pfam	`PF00023`	Ank	Repeat	144	166	2.2e-16	59.7	Ankyrin repeat
`XP_057776286.1`	Pfam	`PF13606`	Ank_3	Repeat	144	168	6.2e-17	60.5	Ankyrin repeat
`XP_057776286.1`	Pfam	`PF13962`	PGG	Domain	223	330	2.9e-24	85.8	Domain of unknown function

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057920303.1
TTTATTTTGTATGTTCTTATAATTCATATGAGATCAAGCAGCTCTCCTTCTAAGCCACCATTTTAATAAAGAATGTTTGGAGAAGAAGGTACAACTGAAAAGAAACTATATGATGCTGCAACAAAGGGAGATTTATCAACATTGCAAGAACTGCTGCAAGAACATCCACACCTTGTTGATGAAGTTTCATATGCACGTTCAAGAAACCTTCTACATTTAGCAACGATGCATACACAAGTTGAGATCGCTAAAACATTGTT...

XM_057920302.1
ATTTTGTATGTTCTTATAATTCATATGAGATCAAGCAGCTCTCCTTCTAAGCCACCATTTTAATAAAGATGTTGGAAAGAATGTTTGGAGAAGAAGGTACAACTGAAAAGAAACTATATGATGCTGCAACAAAGGGAGATTTATCAACATTGCAAGAACTGCTGCAAGAACATCCACACCTTGTTGATGAAGTTTCATATGCACGTTCAAGAAACCTTCTACATTTAGCAACGATGCATACACAAGTTGAGATCGCTAAA...

CDS

3 records

下载 CDS FASTA

LOC130995149
ATGTTGGAAAGAATGTTTGGAGAAGAAGGTACAACTGAAAAGAAACTATATGATGCTGCAACAAAGGGAGATTTATCAACATTGCAAGAACTGCTGCAAGAACATCCACACCTTGTTGATGAAGTTTCATATGCACGTTCAAGAAACCTTCTACATTTAGCAACGATGCATACACAAGTTGAGATCGCTAAAACATTGTTATCGGTAGCCCCTGAGATGTGCTGGTGGATTGATGATCAAGGCATGAACCCGGTTCATAT...

Protein

3 records

下载 Protein FASTA

XP_057776284.1
MLERMFGEEGTTEKKLYDAATKGDLSTLQELLQEHPHLVDEVSYARSRNLLHLATMHTQVEIAKTLLSVAPEMCWWIDDQGMNPVHIAAMKGRVEILEAMLQLDLLPAMERLHRGQTVLHLCVKHRQLTTLTVLVEKLGELVYAKDDDGETLLHLAVRSNQLEMVRYLVEDNKIKKLTKNSMGKTELDVLKECSPHTAISGNYSKMKRILLRKHWLYQEQLMQGYLKITDMTMVVAVLIATMAFQSAVSPPGGVWQDDTP...

XP_057776285.1
MLERMFGEEGTTEKKLYDAATKGDLSTLQELLQEHPHLVDEVSYARSRNLLHLATMHTQVEIAKTLLSVAPEMCWWIDDQGMNPVHIAAMKGRVEILEAMLQLDLLPAMERLHRGQTVLHLCVKHRQLTTLTVLVEKLGELVYAKDDDGETLLHLAVRSNQLEMVRYLVEDNKIKKLTKNSMGKTELDVLKECSPHTAISGNYSKMKRILLRKHWLYQEQLMQGYLKITDMTMVVAVLIATMAFQSAVSPPGGVWQDDTP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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