Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004572`

染色体: Chr07 坐标: 58503337-58505065 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004572`
名称	SmilChr07G004572
描述	ankyrin repeat-containing protein At2g01680-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	58503337 - 58505065 / `-`

ID 对照

NCBI Gene ID	`LOC130994511`
GeneID	`130994511`
locus_tag	`-`
NCBI Name	`LOC130994511`
原始查询	`SmilChr07G004572`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat-containing protein At2g01680-like
产物	ankyrin repeat-containing protein At2g01680-like
Arabidopsis	`AT1G07710` (AT1G07710) Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:837285] identity=29.7; qcov=0.851; evalue=7.14e-23; confidence=low
Rice	`Os03g0281100` (OsSTA96) - identity=30.8; qcov=0.859; evalue=4.39e-20; confidence=low
GO	GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13637 (Ank_4)
InterPro	-
eggNOG	-
NR	GeneID:130994511

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.60000	`XP_057775537.1`
2	Cell membrane	细胞膜	0.60000	`XP_057775537.1`
3	Cytoplasm	细胞质	0.40000	`XP_057775537.1`
4	Nucleus	细胞核	0.00000	`XP_057775537.1`
5	Chromosome	染色体	0.00000	`XP_057775537.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:58503349`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B34
`Chr7:58503349`	`GA`	`G`	1bp_deletion	CDS_variant	1	B34
`Chr7:58503392`	`A`	`AT`	1bp_insertion	frameshift_variant	61	A14,A19,A24,A6,A7,B106,B11,B115,B12,B121,B124,B125,B128,B132,B15,B17,B18,B25,B37,B41,B44,B47,B5,B55,B56,B60,B61,B67,B7,B74,B75,B82,B85,B88,B91,B94,B95,B96,C17,C21,C32,C34,C38,C4,C42,C53,C57,C68,C7,C71,C73,C79,C83,C84,D1,D10,D2,D3,D4,D6,D7
`Chr7:58504505`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:58504538`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A14,A6,B128
`Chr7:58504631`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B115,B15,B67,D4
`Chr7:58504692`	`A`	`AAT`	2bp_insertion	frameshift_variant	2	B18,C57
`Chr7:58504692`	`A`	`AAT`	2bp_insertion	CDS_variant	2	B18,C57
`Chr7:58504697`	`CCG`	`C`	2bp_deletion	frameshift_variant	2	B18,C57
`Chr7:58504697`	`CCG`	`C`	2bp_deletion	CDS_variant	2	B18,C57
`Chr7:58504786`	`AC`	`A`	1bp_deletion	frameshift_variant	16	A7,B106,B115,B15,B5,B67,B88,B91,C32,C53,C68,C73,C84,D10,D2,D4
`Chr7:58504916`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B15,B67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057775537.1

249 aa

124

249

Ank_2

Ank

Ank_4

Ank

Ank_2

PF12796 Ank_2 10-95 aa PF00023 Ank 77-95 aa PF13637 Ank_4 79-129 aa PF00023 Ank 109-133 aa PF12796 Ank_2 114-200 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057775537.1`	Pfam	`PF12796`	Ank_2	Repeat	10	95	5.5e-26	91.7	Ankyrin repeats (3 copies)
`XP_057775537.1`	Pfam	`PF00023`	Ank	Repeat	77	95	6.8e-22	77.1	Ankyrin repeat
`XP_057775537.1`	Pfam	`PF13637`	Ank_4	Repeat	79	129	4e-21	75.3	Ankyrin repeats (many copies)
`XP_057775537.1`	Pfam	`PF00023`	Ank	Repeat	109	133	6.8e-22	77.1	Ankyrin repeat
`XP_057775537.1`	Pfam	`PF12796`	Ank_2	Repeat	114	200	5.5e-26	91.7	Ankyrin repeats (3 copies)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057919554.1
ATGGCTGGAGAAGTAGCCAGAAGGGATCTACACGTTGCTGCAACAGATGGAGACGTCAGAGGATTTCTTGGGCTGCTTCAAGAAGATCCATATCTTCTTGAAGAAGTTTCATTTGCATGTTCGAGAAATCTTCTTCACATAGCGGCGATGCGTGGACAAGTAGGCATTGTTAGAGAGGTGTTGAGGATCAACTCACAACTAGCTCGATATCTAGACTCCCAGAAATCATCTCCTCTTCACATTGCAGCAGCGCAGGGGAA...

CDS

1 records

下载 CDS FASTA

LOC130994511
ATGGCTGGAGAAGTAGCCAGAAGGGATCTACACGTTGCTGCAACAGATGGAGACGTCAGAGGATTTCTTGGGCTGCTTCAAGAAGATCCATATCTTCTTGAAGAAGTTTCATTTGCATGTTCGAGAAATCTTCTTCACATAGCGGCGATGCGTGGACAAGTAGGCATTGTTAGAGAGGTGTTGAGGATCAACTCACAACTAGCTCGATATCTAGACTCCCAGAAATCATCTCCTCTTCACATTGCAGCAGCGCAGGGGAA...

Protein

1 records

下载 Protein FASTA

XP_057775537.1
MAGEVARRDLHVAATDGDVRGFLGLLQEDPYLLEEVSFACSRNLLHIAAMRGQVGIVREVLRINSQLARYLDSQKSSPLHIAAAQGNVEIVEELLLAAPEMCWWRDGQGMNPVHIAAMNGYVRILEVLIGVDPFPAAEKLDRGQTVLHLCLKHRQVKAFQLLVDKFGELVNVEDDDGEMVLHSAVRFRREEEVQYLVENHTTYELPTNSKGKTVQQISRESSQDTSVRIDEILSNRVSYSGKPTGFAGE

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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