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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G004580

染色体: Chr07 坐标: 58577592-58590090 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G004580
名称SmilChr07G004580
描述ankyrin repeat-containing protein At5g02620-like
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向58577592 - 58590090 / -

ID 对照

NCBI Gene IDLOC130995161
GeneID130995161
locus_tag-
NCBI NameLOC130995161
原始查询SmilChr07G004580

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述ankyrin repeat-containing protein At5g02620-like
产物ankyrin repeat-containing protein At5g02620-like
ArabidopsisAT5G51160 (AT5G51160)
Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:835190]
identity=27.3; qcov=0.951; evalue=4.98e-26; confidence=low
RiceOs11g0182900
-
identity=29.9; qcov=0.785; evalue=4.2e-28; confidence=low
GOGO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304)
KEGG-
PfamPF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13962 (PGG)
InterPro-
eggNOG-
NRGeneID:130995161

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057776293.1
2 Nucleus 细胞核 0.00000 XP_057776293.1
3 Chromosome 染色体 0.00000 XP_057776293.1
4 Centromere 着丝粒 0.00000 XP_057776293.1
5 Chromatin 染色质 0.00000 XP_057776293.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:58577766 C T EMS_canonical_SNV CDS_variant 3 A1,B61,C3
Chr7:58577873 C T EMS_canonical_SNV CDS_variant 4 A14,A6,B127,D7
Chr7:58577877 G A EMS_canonical_SNV CDS_variant 4 B128,B68,B90,B92
Chr7:58577988 G A EMS_canonical_SNV CDS_variant 5 B5,C32,C34,C68,C84
Chr7:58578156 G A EMS_canonical_SNV CDS_variant 2 B132,D2
Chr7:58578158 C T EMS_canonical_SNV CDS_variant 2 B56,B96
Chr7:58578180 C T EMS_canonical_SNV CDS_variant 1 B133
Chr7:58578260 C T EMS_canonical_SNV CDS_variant 2 B97,C71
Chr7:58578328 C T EMS_canonical_SNV CDS_variant 5 A8,B111,B3,B52,B81
Chr7:58579545 GT G 1bp_deletion frameshift_variant 7 B101,B127,B40,C16,C62,C80,D5
Chr7:58579549 T TC 1bp_insertion frameshift_variant 7 B101,B127,B40,C16,C62,C80,D5
Chr7:58579586 C T EMS_canonical_SNV CDS_variant 2 B53,B8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776293.1
405 aa
N
1
202
405
Ank_2
Ank
Ank
Ank_3
Ank_2
Ank_4
Ank
Ank_3
PGG
C
PF12796 Ank_2 12-96 aa PF00023 Ank 77-95 aa PF00023 Ank 110-130 aa PF13606 Ank_3 110-130 aa PF12796 Ank_2 113-201 aa PF13637 Ank_4 148-197 aa PF00023 Ank 176-199 aa PF13606 Ank_3 176-200 aa PF13962 PGG 251-366 aa
XP_057776294.1
405 aa
N
1
202
405
Ank_2
Ank
Ank
Ank_3
Ank_2
Ank_4
Ank_2
Ank
Ank_3
PGG
C
PF12796 Ank_2 10-96 aa PF00023 Ank 77-95 aa PF00023 Ank 110-130 aa PF13606 Ank_3 110-130 aa PF12796 Ank_2 113-201 aa PF13637 Ank_4 148-197 aa PF12796 Ank_2 171-213 aa PF00023 Ank 176-199 aa PF13606 Ank_3 176-200 aa PF13962 PGG 251-366 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057776293.1 Pfam PF12796 Ank_2 Repeat 12 96 4.3e-27 95.2 Ankyrin repeats (3 copies)
XP_057776293.1 Pfam PF00023 Ank Repeat 77 95 7.5e-22 76.9 Ankyrin repeat
XP_057776293.1 Pfam PF00023 Ank Repeat 110 130 7.5e-22 76.9 Ankyrin repeat
XP_057776293.1 Pfam PF13606 Ank_3 Repeat 110 130 7.7e-20 69.4 Ankyrin repeat
XP_057776293.1 Pfam PF12796 Ank_2 Repeat 113 201 4.3e-27 95.2 Ankyrin repeats (3 copies)
XP_057776293.1 Pfam PF13637 Ank_4 Repeat 148 197 3.8e-20 72.2 Ankyrin repeats (many copies)
XP_057776293.1 Pfam PF00023 Ank Repeat 176 199 7.5e-22 76.9 Ankyrin repeat
XP_057776293.1 Pfam PF13606 Ank_3 Repeat 176 200 7.7e-20 69.4 Ankyrin repeat
XP_057776293.1 Pfam PF13962 PGG Domain 251 366 2.8e-18 66.5 Domain of unknown function
XP_057776294.1 Pfam PF12796 Ank_2 Repeat 10 96 2.3e-31 108.9 Ankyrin repeats (3 copies)
XP_057776294.1 Pfam PF00023 Ank Repeat 77 95 4.1e-23 80.9 Ankyrin repeat
XP_057776294.1 Pfam PF00023 Ank Repeat 110 130 4.1e-23 80.9 Ankyrin repeat
XP_057776294.1 Pfam PF13606 Ank_3 Repeat 110 130 7.2e-24 81.7 Ankyrin repeat
XP_057776294.1 Pfam PF12796 Ank_2 Repeat 113 201 2.3e-31 108.9 Ankyrin repeats (3 copies)
XP_057776294.1 Pfam PF13637 Ank_4 Repeat 148 197 6.1e-21 74.7 Ankyrin repeats (many copies)
XP_057776294.1 Pfam PF12796 Ank_2 Repeat 171 213 2.3e-31 108.9 Ankyrin repeats (3 copies)
XP_057776294.1 Pfam PF00023 Ank Repeat 176 199 4.1e-23 80.9 Ankyrin repeat
XP_057776294.1 Pfam PF13606 Ank_3 Repeat 176 200 7.2e-24 81.7 Ankyrin repeat
XP_057776294.1 Pfam PF13962 PGG Domain 251 366 2.8e-18 66.5 Domain of unknown function

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057920311.1
GTGTAAGTACTATATATACATACATAATTTTTGTAAGATGAAGAAAGAAACTAAGAAACTAGCTAGAGAGAGCGAAAAAAAAGAAAAAAAAAAGCCATCAATATATAGTTAGTGGGGAAGAATGGTGGGAGAAACAGTAGAAAAGAAACTCTACAATGCTGCATCAAATGGGGATCTAACAATGCTTCAAACACTGCTTCAAGAAGATCCATATCTTGTTGAAAGTGTCTCATTTGCATGTTCAAGAAATGCTGTACACA...
XM_057920310.1
ACATAATAGGCAAATCAAATTTTGTAAAACATTGCACTTTTATAATAGGTATAGAGGTATAGATTGATCAAATATAAGATTAATTAATTGTATTTTTATTCGAATTTCTCCAACTCAACCGTGATATGAATCAAACGAAGTTAATAATTTAGTTCAAATGATACTATTTTTATTTGTCTAGGCTATTCTTAAACAATATTAAATCTCAAACTAGTATTTGAAATAGATTCCATTGTGATAAAGTCCAAAATGTCTCTTTT...

CDS

2 records

下载 CDS FASTA
LOC130995161
ATGGTGGGAGAAACAGTAGAAAAGAAACTCTACAATGCTGCATCAAATGGGGATCTAACAATGCTTCAAACACTGCTTCAAGAAGATCCATATCTTGTTGAAAGTGTCTCATTTGCATGTTCAAGAAATGCTGTACACATAGCAGCACTGCGAGGGCAAGTAGCCATTGTTGAAGAGGTGTTGAACATCAACCCGCAGCTAGCTCGAAATTTGGACTCCGAACAATCATCGCCTCTTCACGTTGCAGCAGCACAAGGGAA...
LOC130995161
ATGGTGGGAGAAACAGTAGAAAAGAAACTCTACAATACGGCATCAAAAGGGGATCTAACAACACTTCAAACACTGCTTCAAGAAGATCCCTATCTTGTTGAAAGTGTCTCATTTGCATGTTCAAGAAATGTTGTGCACATAGCAGCACTGCGGGGGCAAGCATCCATTGTTGAAGAGGTGCTGAACATCAACCCACAGCTAGCTCGAAATTTGGACTCCGAACAATCATCGCCTCTTCACGTTGCAGCAGCACAAGGGAA...

Protein

2 records

下载 Protein FASTA
XP_057776293.1
MVGETVEKKLYNTASKGDLTTLQTLLQEDPYLVESVSFACSRNVVHIAALRGQASIVEEVLNINPQLARNLDSEQSSPLHVAAAQGNIVIVRKLLSVAPEACWWRDCHDMNPIHIAAMNGHDEVLKVLLEESHLPAMERLHRGQTVFHLCVKHGQLMTLKVLVEKLGELVHAKDDDGETLLHLATRSNQLEIVKYLVQHKITRTQTPNSMGKTELKILRESKSPGDKSRYSEIKNMLKKLPDPTKMLPARMGESVLVVLV...
XP_057776294.1
MVGETVEKKLYNAASNGDLTMLQTLLQEDPYLVESVSFACSRNAVHIAALRGQVAIVEEVLNINPQLARNLDSEQSSPLHVAAAQGNIVIVRKLLSVAPEACWWRDCHDMNPIHIAAMNGHDEVLKVLLEESHLPAMERLHRGQTVFHLCVKHGQLMTMKVMVEKLGELVHAKDDDGETLLHLAARSNQLEIVKYLVQHKITRTQTPNSMGKTELKILRESKSPGDKSRYSEIKNMLKKLPDPTKMLPARMGESVLVVLV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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