Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004590`

染色体: Chr07 坐标: 58702698-58704798 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004590`
名称	SmilChr07G004590
描述	ankyrin repeat-containing protein NPR4-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	58702698 - 58704798 / `-`

ID 对照

NCBI Gene ID	`LOC130995167`
GeneID	`130995167`
locus_tag	`-`
NCBI Name	`LOC130995167`
原始查询	`SmilChr07G004590`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat-containing protein NPR4-like
产物	ankyrin repeat-containing protein NPR4-like
Arabidopsis	`AT5G02620` (ANK1) ankyrin-like1 [Source:NCBI gene (formerly Entrezgene);Acc:831855] identity=30.4; qcov=0.92; evalue=2.02e-19; confidence=low
Rice	`Os01g0837000` (OsNPR4) - identity=36.6; qcov=0.955; evalue=3.14e-19; confidence=low
GO	GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4)
InterPro	-
eggNOG	-
NR	GeneID:130995167

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057776298.1`
2	Cytosol	细胞质基质	0.60000	`XP_057776300.1`
3	Nucleus	细胞核	0.00000	`XP_057776298.1`
4	Chromosome	染色体	0.00000	`XP_057776298.1`
5	Centromere	着丝粒	0.00000	`XP_057776298.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:58702968`	`CG`	`C`	1bp_deletion	frameshift_variant	7	B127,B134,B16,B40,B99,C62,D9
`Chr7:58702980`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:58702993`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr7:58703007`	`C`	`CG`	1bp_insertion	frameshift_variant	65	A10,A11,A14,A21,A22,A23,A3,A8,B1,B10,B107,B108,B109,B11,B112,B120,B125,B13,B133,B135,B139,B23,B27,B29,B3,B30,B32,B33,B38,B39,B40,B42,B43,B44,B45,B46,B62,B78,B80,B86,B89,B9,B90,B92,B99,C14,C16,C20,C25,C27,C3,C30,C35,C38,C44,C48,C49,C52,C54,C58,C59,C71,C82,D1,D4
`Chr7:58703023`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A11
`Chr7:58703067`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:58703213`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr7:58704039`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B111,B30,C52,C6
`Chr7:58704040`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B111,B30,C52,C6
`Chr7:58704052`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B111,B34
`Chr7:58704063`	`AAT`	`A`	2bp_deletion	frameshift_variant	2	B111,B34
`Chr7:58704063`	`AAT`	`A`	2bp_deletion	CDS_variant	2	B111,B34

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776298.1

299 aa

150

299

Ank_2

Ank

Ank_4

Ank

Ank_3

Ank_2

Ank_4

Ank

Ank_3

PF12796 Ank_2 10-96 aa PF00023 Ank 76-95 aa PF13637 Ank_4 79-126 aa PF00023 Ank 110-130 aa PF13606 Ank_3 110-130 aa PF12796 Ank_2 113-198 aa PF13637 Ank_4 148-197 aa PF00023 Ank 176-197 aa PF13606 Ank_3 176-198 aa

XP_057776299.1

287 aa

144

287

Ank_2

Ank

Ank_4

Ank_2

Ank

Ank_3

Ank_2

PF12796 Ank_2 10-96 aa PF12796 Ank_2 72-130 aa PF00023 Ank 76-95 aa PF13637 Ank_4 79-126 aa PF12796 Ank_2 108-165 aa PF00023 Ank 110-130 aa PF13606 Ank_3 110-130 aa PF12796 Ank_2 113-190 aa

XP_057776300.1

200 aa

100

200

Ank_2

Ank

Ank_4

Ank_2

Ank

Ank_3

Ank_2

PF12796 Ank_2 10-96 aa PF00023 Ank 76-95 aa PF13637 Ank_4 79-126 aa PF12796 Ank_2 108-165 aa PF00023 Ank 110-130 aa PF13606 Ank_3 110-130 aa PF12796 Ank_2 113-190 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776298.1`	Pfam	`PF12796`	Ank_2	Repeat	10	96	1.5e-27	96.7	Ankyrin repeats (3 copies)
`XP_057776298.1`	Pfam	`PF00023`	Ank	Repeat	76	95	6.4e-22	77.1	Ankyrin repeat
`XP_057776298.1`	Pfam	`PF13637`	Ank_4	Repeat	79	126	1e-22	80.4	Ankyrin repeats (many copies)
`XP_057776298.1`	Pfam	`PF00023`	Ank	Repeat	110	130	6.4e-22	77.1	Ankyrin repeat
`XP_057776298.1`	Pfam	`PF13606`	Ank_3	Repeat	110	130	4.3e-23	79.3	Ankyrin repeat
`XP_057776298.1`	Pfam	`PF12796`	Ank_2	Repeat	113	198	1.5e-27	96.7	Ankyrin repeats (3 copies)
`XP_057776298.1`	Pfam	`PF13637`	Ank_4	Repeat	148	197	1e-22	80.4	Ankyrin repeats (many copies)
`XP_057776298.1`	Pfam	`PF00023`	Ank	Repeat	176	197	6.4e-22	77.1	Ankyrin repeat
`XP_057776298.1`	Pfam	`PF13606`	Ank_3	Repeat	176	198	4.3e-23	79.3	Ankyrin repeat
`XP_057776299.1`	Pfam	`PF12796`	Ank_2	Repeat	10	96	8.9e-39	132.7	Ankyrin repeats (3 copies)
`XP_057776299.1`	Pfam	`PF12796`	Ank_2	Repeat	72	130	8.9e-39	132.7	Ankyrin repeats (3 copies)
`XP_057776299.1`	Pfam	`PF00023`	Ank	Repeat	76	95	1.6e-19	69.6	Ankyrin repeat
`XP_057776299.1`	Pfam	`PF13637`	Ank_4	Repeat	79	126	1.7e-20	73.3	Ankyrin repeats (many copies)
`XP_057776299.1`	Pfam	`PF12796`	Ank_2	Repeat	108	165	8.9e-39	132.7	Ankyrin repeats (3 copies)
`XP_057776299.1`	Pfam	`PF00023`	Ank	Repeat	110	130	1.6e-19	69.6	Ankyrin repeat
`XP_057776299.1`	Pfam	`PF13606`	Ank_3	Repeat	110	130	1.3e-20	71.8	Ankyrin repeat
`XP_057776299.1`	Pfam	`PF12796`	Ank_2	Repeat	113	190	8.9e-39	132.7	Ankyrin repeats (3 copies)
`XP_057776300.1`	Pfam	`PF12796`	Ank_2	Repeat	10	96	1.2e-30	106.7	Ankyrin repeats (3 copies)
`XP_057776300.1`	Pfam	`PF00023`	Ank	Repeat	76	95	1e-20	73.3	Ankyrin repeat
`XP_057776300.1`	Pfam	`PF13637`	Ank_4	Repeat	79	126	2.5e-20	72.8	Ankyrin repeats (many copies)
`XP_057776300.1`	Pfam	`PF12796`	Ank_2	Repeat	108	165	1.2e-30	106.7	Ankyrin repeats (3 copies)
`XP_057776300.1`	Pfam	`PF00023`	Ank	Repeat	110	130	1e-20	73.3	Ankyrin repeat
`XP_057776300.1`	Pfam	`PF13606`	Ank_3	Repeat	110	130	7.9e-22	75.5	Ankyrin repeat
`XP_057776300.1`	Pfam	`PF12796`	Ank_2	Repeat	113	190	1.2e-30	106.7	Ankyrin repeats (3 copies)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057920317.1
TTCCATGGATCCTATCTTGCAATTGAGAAGTAGGAAATTGGGCAGAATCTTCTTTTCGATCAGTACGTAGTCCTAACAGAGGTCTTTGTTTGAACATTTCCACGGCGGCTTTCTTGAGAGAGAGAGAGAGCTTGTTTATGTACTATATATACATGCATTATTTTTGTAAGATGAAGAAAGAAACTAAGAAACTAGCTAAAGAGAGAGAGAGAGAAAAGAAAAGAAAAAAGAAACCATCAATATATAGTTAGTGGGGAAGA...

XM_057920316.1
TTCCATGGATCCTATCTTGCAATTGAGAAGTAGGAAATTGGGCAGAATCTTCTTTTCGATCAGTACGTAGTCCTAACAGAGGTCTTTGTTTGAACATTTCCACGGCGGCTTTCTTGAGAGAGAGAGAGAGCTTGTTTATGTACTATATATACATGCATTATTTTTGTAAGATGAAGAAAGAAACTAAGAAACTAGCTAAAGAGAGAGAGAGAGAAAAGAAAAGAAAAAAGAAACCATCAATATATAGTTAGTGGGGAAGA...

CDS

3 records

下载 CDS FASTA

LOC130995167
ATGGTGGGAGAAACAGTAGAAAAGAAACTCTACAATGCAGCATCAGAAGGGGATCTAACAACACTTCAAACACTGCTTCAAGAAGATCCATATCTTGTTCACGAAGCCCCATTTGCATACTCAAGAAATCTTCTACACGTAGCAGCAATGCATGGCCAAGCGGCCATCGTTGAAGAGGTATTGAAGATGAATCCACGGCTAGCTACGAGTTTAGACTCGAAAAATTTGTCACCTCTTCACATTGCAGCTGCGGAAGGGAG...

Protein

3 records

下载 Protein FASTA

XP_057776298.1
MVGETVEKKLYNAASEGDLTTLQTLLQEDPYLVHEAPFAYSRNLLHVAAMHGQAAIVEEVLKMNPRLATSLDSKNLSPLHIAAAEGSLEIVKKLLSLAPEACWWRDCHDMNPIHIAAMNGHVEILEELLKESHLPAMERLHRGQTVFHLCVKHGQLTTLMVLVDKLGELVRAKDDDGETLLHLAVRSNQLAIVAFLVAFKIIKTQTPNSRGKTELKILLESPPDTSNYSEMHKILKKLQDRSKWEPVKLTDTAMVVVVLI...

XP_057776299.1
MVGETVEKKLYNAASEGDLTTLQTLLQEDPYLVHEAPFAYSRNLLHVAAMHGQAAIVEEVLKMNPRLATSLDSKNLSPLHIAAAEGSLEIVKKLLSLAPEACWWRDCHDMNPIHIAAMNGHVEILEELLKESHLPAMERLHRGQTVFHLCVKHGQLTTLMVLVDKLGELVRAKDDDGETLLHLAVRSNQLATQTPNSRGKTELKILLESPPDTSNYSEMHKILKKLQDRSKWEPVKLTDTAMVVVVLIASMAFQVAISPP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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