Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004595`

染色体: Chr07 坐标: 58740212-58742746 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004595`
名称	SmilChr07G004595
描述	ankyrin repeat-containing protein At5g02620-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	58740212 - 58742746 / `-`

ID 对照

NCBI Gene ID	`LOC130995172`
GeneID	`130995172`
locus_tag	`-`
NCBI Name	`LOC130995172`
原始查询	`SmilChr07G004595`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ankyrin repeat-containing protein At5g02620-like
产物	ankyrin repeat-containing protein At5g02620-like
Arabidopsis	`AT5G51160` (AT5G51160) Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:835190] identity=30; qcov=0.786; evalue=2.63e-34; confidence=low
Rice	`Os11g0182900` - identity=27.2; qcov=0.865; evalue=1.23e-27; confidence=low
GO	GO:0005886 (plasma membrane); GO:0008157 (protein phosphatase 1 binding); GO:0019888 (protein phosphatase regulator activity); GO:0035304 (GO:0035304)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13962 (PGG)
InterPro	-
eggNOG	-
NR	GeneID:130995172

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057776306.1`
2	Nucleus	细胞核	0.00000	`XP_057776306.1`
3	Chromosome	染色体	0.00000	`XP_057776306.1`
4	Centromere	着丝粒	0.00000	`XP_057776306.1`
5	Chromatin	染色质	0.00000	`XP_057776306.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:58740353`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B137
`Chr7:58740393`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B131,B78
`Chr7:58740401`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B131,B78
`Chr7:58740417`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B2,C42
`Chr7:58740425`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:58740464`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B131,B27,C51
`Chr7:58740498`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B131,B78
`Chr7:58740544`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A21,B16,B83,C59,D6
`Chr7:58740576`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr7:58740709`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B12,B47,B60,C58,C87
`Chr7:58740732`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr7:58740737`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A20,B12,B60,C16,C58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057776306.1

429 aa

214

429

Ank_2

Ank

Ank_4

Ank_2

Ank_3

Ank

Ank_4

Ank_3

Ank

PGG

PF12796 Ank_2 13-101 aa PF00023 Ank 81-103 aa PF13637 Ank_4 83-133 aa PF12796 Ank_2 109-174 aa PF13606 Ank_3 113-137 aa PF00023 Ank 113-139 aa PF13637 Ank_4 151-201 aa PF13606 Ank_3 180-203 aa PF00023 Ank 180-208 aa PF13962 PGG 258-370 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057776306.1`	Pfam	`PF12796`	Ank_2	Repeat	13	101	2.1e-31	109.1	Ankyrin repeats (3 copies)
`XP_057776306.1`	Pfam	`PF00023`	Ank	Repeat	81	103	1.1e-23	82.7	Ankyrin repeat
`XP_057776306.1`	Pfam	`PF13637`	Ank_4	Repeat	83	133	1.9e-19	70.0	Ankyrin repeats (many copies)
`XP_057776306.1`	Pfam	`PF12796`	Ank_2	Repeat	109	174	2.1e-31	109.1	Ankyrin repeats (3 copies)
`XP_057776306.1`	Pfam	`PF13606`	Ank_3	Repeat	113	137	1e-22	78.2	Ankyrin repeat
`XP_057776306.1`	Pfam	`PF00023`	Ank	Repeat	113	139	1.1e-23	82.7	Ankyrin repeat
`XP_057776306.1`	Pfam	`PF13637`	Ank_4	Repeat	151	201	1.9e-19	70.0	Ankyrin repeats (many copies)
`XP_057776306.1`	Pfam	`PF13606`	Ank_3	Repeat	180	203	1e-22	78.2	Ankyrin repeat
`XP_057776306.1`	Pfam	`PF00023`	Ank	Repeat	180	208	1.1e-23	82.7	Ankyrin repeat
`XP_057776306.1`	Pfam	`PF13962`	PGG	Domain	258	370	9.5e-28	97.0	Domain of unknown function

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057920323.1
ATGGAAGAAACGCCTATGAAATCAGAGGAGAAGAAGCTTTACGACGCCGCAGCAGAAGGGAATGCAACAGTATTTCAACAACTGCTCCAACAAGATCCATTTCTTCTCAATAAAATCTCATTTTCATGCACTCACAAATCTCCTCTTCACATAGCAACACTGCAAAGAAATCTCAATATCGTAGAACAAATCTTGAGCAATAATCCACAGCTAGCTGAGGAATTGGACTCCCAGAAATCGTCGCCTCTTCACATCGCAGC...

CDS

1 records

下载 CDS FASTA

LOC130995172
ATGGAAGAAACGCCTATGAAATCAGAGGAGAAGAAGCTTTACGACGCCGCAGCAGAAGGGAATGCAACAGTATTTCAACAACTGCTCCAACAAGATCCATTTCTTCTCAATAAAATCTCATTTTCATGCACTCACAAATCTCCTCTTCACATAGCAACACTGCAAAGAAATCTCAATATCGTAGAACAAATCTTGAGCAATAATCCACAGCTAGCTGAGGAATTGGACTCCCAGAAATCGTCGCCTCTTCACATCGCAGC...

Protein

1 records

下载 Protein FASTA

XP_057776306.1
MEETPMKSEEKKLYDAAAEGNATVFQQLLQQDPFLLNKISFSCTHKSPLHIATLQRNLNIVEQILSNNPQLAEELDSQKSSPLHIAAAKGYVEIASALLSEAPNMCWSRDSRGMNPIHVAAMNGRVEVLEKLVEEDGFAAMERLDRGETVLHLCVKHRQLWALKVLVEKLGEFVCAEDDDGETVLHLAVRFRQVEMIRYLVESTKIDKKSKNSKGQTPLKLLKQIISHSAGSDKTTTKIKEILKSRSTNQPSQTPPVEWL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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