当前解析结果
SmilChr07G004597| 统一新 Gene ID | SmilChr07G004597 |
|---|---|
| 名称 | SmilChr07G004597 |
| 描述 | putative late blight resistance protein homolog R1C-3 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 58760805 - 58763597 / - |
| NCBI Gene ID | LOC130994522 |
|---|---|
| GeneID | 130994522 |
| locus_tag | - |
| NCBI Name | LOC130994522 |
| 原始查询 | SmilChr07G004597 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1C-3 |
| 产物 | putative late blight resistance protein homolog R1C-3 |
| Arabidopsis | AT1G53350 (AT1G53350)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=25.5; qcov=0.935; evalue=6.94e-61; confidence=low |
| Rice | Os07g0186500- identity=28.5; qcov=0.952; evalue=2.41e-65; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994522 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057775548.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057775548.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057775548.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057775548.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057775548.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:58760808 |
CA |
C |
1bp_deletion | frameshift_variant | 122 | A2,A20,A21,A22,A23,A24,A25,A4,A5,A8,A9,B1,B106,B107,B110,B111,B112,B114,B115,B117,B118,B121,B122,B123,B127,B128,B131,B134,B136,B137,B138,B139,B16,B2,B21,B22,B25,B28,B29,B31,B34,B35,B36,B4,B40,B41,B43,B46,B53,B54,B56,B58,B6,B63,B65,B67,B69,B7,B71,B72,B73,B78,B81,B83,B84,B86,B88,B89,B90,B92,B93,B96,B98,B99,C1,C11,C13,C15,C17,C18,C19,C23,C24,C28,C29,C31,C33,C40,C42,C43,C45,C46,C47,C48,C49,C5,C50,C53,C55,C58,C59,C60,C61,C69,C71,C72,C75,C76,C77,C79,C8,C81,C84,C85,C86,C9,D10,D2,D4,D6,D7,D8 |
Chr7:58760848 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B58,C10,C46 |
Chr7:58760854 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B127,B128 |
Chr7:58760861 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:58760883 |
TAG |
T |
2bp_deletion | frameshift_variant | 1 | B68 |
Chr7:58760883 |
TAG |
T |
2bp_deletion | CDS_variant | 1 | B68 |
Chr7:58760906 |
GT |
G |
1bp_deletion | frameshift_variant | 12 | B117,B130,B4,B62,B64,B65,B75,C51,C52,C61,C7,C80 |
Chr7:58760909 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr7:58760912 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,C45 |
Chr7:58760930 |
G |
A |
EMS_canonical_SNV | stop_gained | 22 | A22,A25,A8,B111,B118,B123,B3,B35,B36,B52,B56,B81,B90,B92,B93,B96,C24,C36,C47,C5,C76,C77 |
Chr7:58760963 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,C43 |
Chr7:58760982 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775548.1PF00931
NB-ARC 169-332 aa
PF23559
WHD_DRP 418-489 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775548.1 |
Pfam | PF00931 |
NB-ARC | Domain | 169 | 332 | 3e-38 | 131.8 | NB-ARC domain |
XP_057775548.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 418 | 489 | 1.4e-16 | 61.0 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。