当前解析结果
SmilChr07G004601| 统一新 Gene ID | SmilChr07G004601 |
|---|---|
| 名称 | SmilChr07G004601 |
| 描述 | putative late blight resistance protein homolog R1B-17 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 58818492 - 58820564 / - |
| NCBI Gene ID | LOC130994523 |
|---|---|
| GeneID | 130994523 |
| locus_tag | - |
| NCBI Name | LOC130994523 |
| 原始查询 | SmilChr07G004601 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-17 |
| 产物 | putative late blight resistance protein homolog R1B-17 |
| Arabidopsis | AT1G53350 (AT1G53350)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=27.9; qcov=0.923; evalue=3.32e-63; confidence=low |
| Rice | Os11g0633500- identity=34.9; qcov=0.523; evalue=4.78e-66; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130994523 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057775550.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057775550.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057775550.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057775550.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057775550.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:58818507 |
G |
GT |
1bp_insertion | frameshift_variant | 1 | D11 |
Chr7:58818507 |
G |
GT |
1bp_insertion | CDS_variant | 1 | D11 |
Chr7:58818567 |
AAC |
A |
2bp_deletion | frameshift_variant | 13 | B108,B122,B44,B5,C17,C32,C34,C39,C68,C79,C84,C85,D10 |
Chr7:58818571 |
T |
TA |
1bp_insertion | frameshift_variant | 110 | A21,A22,A23,A3,A5,A6,A9,B104,B106,B108,B109,B11,B112,B113,B114,B117,B119,B120,B121,B122,B125,B126,B131,B133,B134,B135,B14,B15,B2,B20,B23,B25,B3,B30,B31,B35,B4,B40,B41,B44,B48,B5,B54,B55,B58,B6,B61,B67,B73,B74,B75,B76,B77,B78,B82,B86,B87,B89,B9,B95,B98,B99,C1,C11,C13,C14,C16,C17,C18,C20,C21,C24,C25,C27,C3,C30,C32,C33,C34,C38,C39,C4,C43,C49,C5,C50,C51,C54,C55,C57,C58,C63,C65,C67,C68,C69,C71,C73,C77,C79,C83,C84,C85,D1,D10,D11,D3,D4,D7,D9 |
Chr7:58818573 |
C |
CTT |
2bp_insertion | frameshift_variant | 105 | A10,A18,A20,A21,A22,A23,A3,A5,A6,A7,A9,B104,B106,B109,B11,B112,B113,B114,B117,B119,B120,B121,B124,B125,B126,B131,B134,B135,B14,B15,B2,B20,B23,B25,B3,B30,B31,B35,B4,B40,B41,B48,B54,B55,B58,B6,B61,B66,B67,B73,B74,B75,B77,B78,B79,B8,B82,B86,B87,B89,B9,B95,B98,B99,C1,C11,C13,C14,C16,C18,C20,C21,C24,C25,C27,C3,C30,C33,C38,C4,C43,C49,C5,C50,C51,C54,C55,C57,C58,C60,C63,C65,C67,C69,C71,C73,C77,C83,D1,D11,D3,D4,D6,D7,D9 |
Chr7:58818609 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr7:58818636 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A10,B8,C26,C32,C68 |
Chr7:58818651 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | A5,B112,B131,B2,B78,C58 |
Chr7:58818671 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B108,B95,B99,C24 |
Chr7:58818675 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B115,D4 |
Chr7:58818679 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr7:58818693 |
G |
GC |
1bp_insertion | frameshift_variant | 1 | C14 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057775550.1PF00931
NB-ARC 201-364 aa
PF23559
WHD_DRP 449-521 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057775550.1 |
Pfam | PF00931 |
NB-ARC | Domain | 201 | 364 | 2.5e-39 | 135.3 | NB-ARC domain |
XP_057775550.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 449 | 521 | 6.2e-14 | 52.5 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。